Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01170 GTCATTCTCTCTTCCGGCCATACCTTCGACCGCTCCTCCATTCAACGCTGGCTCGACGCCGGCCACCGCACTTGCCCAATTACCAAACTACCCCTCCCACACCACTCTTCCCTCATCCCCAACCACGCTCTCCGAAGCTTGATTTCCAACTACGCCCCCATAAACCCTCTTAACCATTCCAACCCACAAACCCTAATCTCCACCCTCACCTCTCCCACCTCCTCTCCCCCCTCCAAACTCCACGCCCTCCGCCTCCTCACACGCTTATCCCACGACGACACCCTTTTACGCCGCCGCCTCTCCGACTCCCCCGCCCTCCTCCCTGTCCTTCTCTCCTGCCTCCACGACGCCGCTTCCTCTGCCCTCCGCCATCGCGCCCTCTCCCTCCTCCTCCACCTCTCCCTCGACGACGACACCAAAGTTGGCCTCGTCGCCCAGGGCGTCCTCTCCCGCATCGTAGCCCTCCTCTCTGCCCCCTCCGACTGCCGCGCCGTCGCCGCCACCCTCCTCACCAGTCTCGCCGTCCTCCACGTTAACAAGGCCACCATCGGAGCCTTCCCCCGCGCCATTCACGCCCTTGTCTCCCTCCTCCGAGACGGCAGGCCCAGGGAGAGTAAAGAAGCCGCCACCGCGCTCTTCGCTCTCTGCTCCTTCCCTGAGAACCGCCGCCGGGCGGTCGAGTGCGGCGCCGTCCCCACTCTCCTTCGGAGCGCCGATTCGGGGCTCGAGAGAAGCGTGGAGGTCATCGGAGTTTTGGCGAAGTGTAAGGAGGGGAGGGAGCACATGGAACGGTTTGGCGAGTGCGTGCAGATTCTTGCTCGTGTGTTGAGGAATGGAAGCTCCAGGGGAGTTCAGTATGCTCTTATGACTCTCTATTCGCTCTGTTGTCATAGTGTGGAAACTGTTCTTGAGTCCTTGAGAAATGGGGTTTTGGAAATTTGTGAAGAGTTGTTGCAGGATGACAATGCCAAGGTCAAGAGGAATTCGTCATGTTTGATTCAGCTTCTCCGTAAACACCCATTTGTTGAGTTGAGAGAATGA 1041 0.5965 VILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPHHSSLIPNHALRSLISNYAPINPLNHSNPQTLISTLTSPTSSPPSKLHALRLLTRLSHDDTLLRRRLSDSPALLPVLLSCLHDAASSALRHRALSLLLHLSLDDDTKVGLVAQGVLSRIVALLSAPSDCRAVAATLLTSLAVLHVNKATIGAFPRAIHALVSLLRDGRPRESKEAATALFALCSFPENRRRAVECGAVPTLLRSADSGLERSVEVIGVLAKCKEGREHMERFGECVQILARVLRNGSSRGVQYALMTLYSLCCHSVETVLESLRNGVLEICEELLQDDNAKVKRNSSCLIQLLRKHPFVELRE* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01170 346 SMART Ubox_2 1 51 IPR003613 GO:0004842|GO:0016567
Lapu6g01170 346 Pfam U-box domain 1 51 IPR003613 GO:0004842|GO:0016567
Lapu6g01170 346 SMART arm_5 255 296 IPR000225 GO:0005515
Lapu6g01170 346 SMART arm_5 179 217 IPR000225 GO:0005515
Lapu6g01170 346 SMART arm_5 50 91 IPR000225 GO:0005515
Lapu6g01170 346 SMART arm_5 136 175 IPR000225 GO:0005515
Lapu6g01170 346 ProSiteProfiles U-box domain profile. 1 58 IPR003613 GO:0004842|GO:0016567
Lapu6g01170 346 Gene3D - 57 343 IPR011989 -
Lapu6g01170 346 SUPERFAMILY RING/U-box 1 53 - -
Lapu6g01170 346 PANTHER U BOX DOMAIN-CONTAINING 1 336 - -
Lapu6g01170 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 56 IPR013083 -
Lapu6g01170 346 SUPERFAMILY ARM repeat 61 339 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01170 Lapu-Chr6 11568991 11570467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01170 1 341 U-box Gene Family AT4G21350 54.391 1.25e-118 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01170 - - gmx:100796272 502.671