Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01168 ATGGCTGAGGAGTTTCAAGCTGCTATCTGTGGTGAAAGTTGGTGGAATATTAATCCAACAAGAAGTGTGTTCCCTCTGATGTCATCAACTTGTTCCGTGGCTGCAGCTGATGCAGGAAACTACGGCACTTGGCAAAGCACTGATTTCGTGGATTTGAAGGGAACGAGATCTTGTGCCGAGGATAATAATAACTTTATTTCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAACAGAGGGACTCAGCTAGTGGAACTGGTAGCATCCTGATCGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTTCATCGAATTGGAATCAATCTTTATTAGGGAACGATTTCCATTCCGTGCTTGAAGAAGAAACAGGAATGGGTGGTGGTTCTTCCCATAATTCACAAATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCAGCTGGAGGCCAAGGTTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCCTTGGATCAGCAAAGTCTGAATTCCGTTGTTACAAGCACCGGATCATTATCCGGTGGTTTTCCAGCTGTTTCAGCCTCCTATGGTTACCCTTCAACCTTGATACAAAGCTTATATGATCCTGAGCCTCAACCACAGCCACAGAACTCACTTTTCACCAATCCCCCTATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAATCTCTTCCCTTCTGAAGCCCTCAACTCCAAAACAGCAGCTTAGTGGATTGCACTTTTCCAACAGCACTTCTTTCTGGAATGGTTCAGCCGAAGCACTTCAAGACATAAGAGCAGGTGTTTTTGCTTCATCACAGGCGCAATATCAAACGCAAAAATTTGAAGAGAAATCCAACTGCCCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCTCCAGACGCAGCTTCACCTGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCCCCATTACCAACTTTCAAGGTTAGGAAAGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCACGACCAAGTCAGTGTGTTGAGCACTCCATATATTAAAAACGGAGCGGCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGACTCAGAGGGGCCAAAACAAGATCTGAGAAGCCGAGGGCTGTGTTTGGTGCCGATTTCGAGCACGTTCCCGGTGGCTAATGAGACCAGTGTTGATTTCTGGACGCCAACATTCGGAGGTGCACTGATTGGCAGGTAG 1398 0.4492 MAEEFQAAICGESWWNINPTRSVFPLMSSTCSVAAADAGNYGTWQSTDFVDLKGTRSCAEDNNNFISSDNSLSFLDVEKPQQRDSASGTGSILIDSTLQMMGFGMSSSTSSNWNQSLLGNDFHSVLEEETGMGGGSSHNSQIQKDWSPKNFSSAGGQGSTVDAFKSMNQEFSLDQQSLNSVVTSTGSLSGGFPAVSASYGYPSTLIQSLYDPEPQPQPQNSLFTNPPMSYSSSTANYGTCSNELSPTWSKISSLLKPSTPKQQLSGLHFSNSTSFWNGSAEALQDIRAGVFASSQAQYQTQKFEEKSNCPNTLLNKLKREESPDAASPAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYIKNGAAIQHQQDCDNLKDSEGPKQDLRSRGLCLVPISSTFPVANETSVDFWTPTFGGALIGR* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01168 465 FunFam Transcription factor bHLH123 family 353 415 - -
Lapu6g01168 465 Gene3D - 353 415 IPR036638 GO:0046983
Lapu6g01168 465 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 166 444 - -
Lapu6g01168 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Lapu6g01168 465 MobiDBLite consensus disorder prediction 133 158 - -
Lapu6g01168 465 CDD bHLH_AtbHLH_like 349 400 IPR045239 -
Lapu6g01168 465 MobiDBLite consensus disorder prediction 130 158 - -
Lapu6g01168 465 MobiDBLite consensus disorder prediction 319 342 - -
Lapu6g01168 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 408 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01168 Lapu-Chr6 11548615 11551907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01168 1 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 38.254 4.01e-69 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01168 - - gmx:100794682 726.472