Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01165 ATGCTCAGTTTACAAAGCCTTCAAACACACCTCTTTCCCCCACAAATGGAGTGTGAAGATGAGGATTGGCTATGTGTTACCATGGAGGAGTTTTCTCTTGTTACTGAACATGGTTGTAGCAAGCAAGGGATGGGTAGGAAGAGGAACTATGATGATGACACAAGAGAGTTCAAATCAAAGAACCTTGAGACTGAAAGGAGGAGGAGGGAGAAGCTCAGTAGCAGGCTGTTGATGCTGCGTGCTATAGTGCCTATCATTACTAATATGAACAAAGCCACAATCATTGAAGATGCTATCACCTACATTGAAAAACTTCAAGACAAAGTCCAGAGTCTCAGCCAAGAGCTTCACCAAATGGAAGCAACTTCAGAGGAAACAGTAGAGACAAAAGTAGATGAAATTGATGCTGCAGAAGATATGAAGAATCTGGGGATACAGGAAGAGGTCAGAGTGGCACAAATAGAGGGGAATAAATTGTGGATTAAGATCATCATTGAGAAGAAGAAAGGAAGATTCCGGAAATTGATGGAAGCTCTCAATAATTTCGGCATTGAACTCATAGACACCAATCTCACAACCACAAAAGGAGCATTTCTTATTACAAGCTGTATTCAGGACAGGGAGGATCTCTTTCAATTGTCCAACATATGGAGCATGACGATGAAGATTGGTTGTGTGTTACTATGGAAGAAAATGATTGTAGCAGAGAAAGGATGA 717 0.4114 MLSLQSLQTHLFPPQMECEDEDWLCVTMEEFSLVTEHGCSKQGMGRKRNYDDDTREFKSKNLETERRRREKLSSRLLMLRAIVPIITNMNKATIIEDAITYIEKLQDKVQSLSQELHQMEATSEETVETKVDEIDAAEDMKNLGIQEEVRVAQIEGNKLWIKIIIEKKKGRFRKLMEALNNFGIELIDTNLTTTKGAFLITSCIQDREDLFQLSNIWSMTMKIGCVLLWKKMIVAEKG* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01165 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 105 IPR011598 GO:0046983
Lapu6g01165 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 122 IPR036638 GO:0046983
Lapu6g01165 238 Pfam Helix-loop-helix DNA-binding domain 60 106 IPR011598 GO:0046983
Lapu6g01165 238 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 211 - -
Lapu6g01165 238 SMART finulus 62 111 IPR011598 GO:0046983
Lapu6g01165 238 Coils Coil 95 129 - -
Lapu6g01165 238 Gene3D - 48 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01165 Lapu-Chr6 11515627 11519271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01165 44 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 46.591 2.75e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g01165 HLH 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01165 - - vun:114186874 342.813