Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01154 ATGAGTAATGGTGATTGGGTGTTGGATTATGATTATCTAGACGACATTTCCCTTCCCACTCTTCACCCACCCAATTTCTCTTGGTCTTCCTCTTCTCCTCCTCCCACCCTCAGTGTGGAGGTAGATGACCCATTGGGAATTTCGGATGGTTTCAAGGAAAACGGGTCAAGAAAACGTCTGAGATCACCTGGTTCCAAAGCATGTAAAGAGAAAATGAGAAGGGATAGACTCAATGACAGGTTTTTGGAACTGGGGTCTGTCCTGGACCCTGGAAGGCCTGTCAAAATGGACAAGGGTGTTATATTAAGTGATGCAGTACGAATTGTGTCTCAGTTACGAGAGGAAGCTCAGAAGCTACGAGAGTCCATTGAGAATCTACAAGGGAAAATCAATGAATTGAAGGCTGAGAAGAATGAACTTCGTGAGGAGAAGCAGCGACTAAAAGCAGAGAAAGATAACCTTGAGCAGAAGATTGAGGCCTTGAGTTCACAACCAAGCTTTCTTCCTGCGTTTCCTGCACCAGGACAAGTTGTCGGTGGCAAGTTGGTGCCCTTCATGGGCTATCCAGGAGTTGCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGACACCTCACAGGACCATGTACTCAGACCACCTGTTGCATAA 648 0.466 MSNGDWVLDYDYLDDISLPTLHPPNFSWSSSSPPPTLSVEVDDPLGISDGFKENGSRKRLRSPGSKACKEKMRRDRLNDRFLELGSVLDPGRPVKMDKGVILSDAVRIVSQLREEAQKLRESIENLQGKINELKAEKNELREEKQRLKAEKDNLEQKIEALSSQPSFLPAFPAPGQVVGGKLVPFMGYPGVAMWQFLPPAAVDTSQDHVLRPPVA* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01154 215 SMART finulus 67 118 IPR011598 GO:0046983
Lapu6g01154 215 Gene3D arf6 gtpase in complex with a specific effector, jip4 111 164 - -
Lapu6g01154 215 Gene3D - 52 110 IPR036638 GO:0046983
Lapu6g01154 215 CDD Prefoldin 117 184 - -
Lapu6g01154 215 PANTHER BHLH TRANSCRIPTION FACTOR 4 215 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Lapu6g01154 215 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Lapu6g01154 215 MobiDBLite consensus disorder prediction 52 69 - -
Lapu6g01154 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Lapu6g01154 215 CDD bHLH_AtILR3_like 66 141 - -
Lapu6g01154 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 132 IPR036638 GO:0046983
Lapu6g01154 215 Coils Coil 102 164 - -
Lapu6g01154 215 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01154 Lapu-Chr6 11447813 11450207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01154 3 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 55.652 1.66e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g01154 HLH 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01154 - - ccaj:109814067 356.295