Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01137 ATGAGGAGTTTTCATATGGAGATTTCATCAATCAGAGGGTTACCTGAATTGGGGATAATAGAGGACCCTAACTTTCTCCATCAGTGGCAGTTAAACCCTACTGATACAACTAGCTTAACAGGTGGTGCTTTTGGTGAGAGTTTGCAAAAGTTCTCATTCTCTGGAAACTCAAACTTCAACCCCAAAACATCCATGGAAACATCACCGCATGGATTTGAAAGACCAACAAAACAGCTCAGAAACAACAGCTGGAATAGCAATAAAAGTCAACAACAGACACCAGAGATACAATATGCTTCATGCTCAAATCTACTTTCATTTGTTAATTCGAATTACTCAAATGAATTGGAACCAGTGAAGCCTAAGGTGGAGATGGTGTGTCCTAAAATTGATAACAGTACTCTTGCAGAGATTTTGATCTCTCAAGGAACCTTTGGGAATCAAAACTATCACTTCAAGGCCAGCCAGGAGGCCAAAAAGATTGAAACACGTCCCAAACTTTCTCAACCTCAGGACCACATAATAGCTGAAAGGAAGCGGAGAGAGAAGCTCAGCCAACGGTTCATTGCTCTATCTGCTCTCGTTCCTGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCGATCAAGTACTTGAAACAAATGCAAGAGAGAGTGAGTGCACTTGAGGAGGAACAGAACCGGAAGAGAACTGTGGAATCTGTGGTAACTGTGAGGAAATCTCAGCTATCTGAGGATGCTGAAGACTCTTCTACTTCAGACACTGGTGGTACATTGGACGAGGCACTTCCTGAAATTGAAGCAAGATTTTGTGAAAGAAATGTTCTCATAAGAATACACTGTGAGAAGAATAAAGGAATCATAGAGAAAACAATCAGTGAAATTGAGAAACTCCATTTAAAAGTCACCAATAGCAGTGCGCTGTCATTTGGGAGTTTCATTCTTGATATAACAATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTCGTGAGAAGTTTACGCTCAGCTTTTTCATATTAG 1041 0.4063 MRSFHMEISSIRGLPELGIIEDPNFLHQWQLNPTDTTSLTGGAFGESLQKFSFSGNSNFNPKTSMETSPHGFERPTKQLRNNSWNSNKSQQQTPEIQYASCSNLLSFVNSNYSNELEPVKPKVEMVCPKIDNSTLAEILISQGTFGNQNYHFKASQEAKKIETRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQERVSALEEEQNRKRTVESVVTVRKSQLSEDAEDSSTSDTGGTLDEALPEIEARFCERNVLIRIHCEKNKGIIEKTISEIEKLHLKVTNSSALSFGSFILDITIIAQMDMEFCMTVKDLVRSLRSAFSY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01137 346 CDD bHLH_AtNAI1_like 171 243 - -
Lapu6g01137 346 Coils Coil 207 234 - -
Lapu6g01137 346 PANTHER BHLH TRANSCRIPTION FACTOR 44 344 - -
Lapu6g01137 346 MobiDBLite consensus disorder prediction 55 92 - -
Lapu6g01137 346 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Lapu6g01137 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Lapu6g01137 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 245 IPR036638 GO:0046983
Lapu6g01137 346 Gene3D - 167 240 IPR036638 GO:0046983
Lapu6g01137 346 SMART finulus 174 223 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01137 Lapu-Chr6 11320966 11322767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01137 168 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 60.556 4.83e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g01137 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01137 - - gmx:100798018 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01137 6 11320966 11322767 Lapu6g01137 6 11320966 11322767 ECH
Lapu3g02918 3 52243017 52244723 Lapu6g01137 6 11320966 11322767 PCT