Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01128 ATGGAGAATTATTCATACCAATCATACCCTGATTCTGGTGACTCCTCTCCACGCTCCAGAGAGATCGACTTTGACAACCCTCCTCCTCCATGGGACGAACAACAACAACAAAATTACAAGGTAAAGTTCATGTGCAGCTACGGCGGCAAGATCCACCCACGCTCCCACGACAACCAACTCTCATACGTCGGCGGCGAGACCAAGATCCTAGCCGTCGACCGCTCCATTAAGTTTGGCGCCCTGCTGGCCAAGCTCTCCGCCCTCTGCGAGGCGCCGCCGCAAGAAAGCAACGGCAACAGCCTCATCTTCAAGTACCAGCTCCCGGGCGAAGACCTCGACGCTCTCATCTCCGTCACCAACGACGACGACCTCGACCACATGATGCACGAGTACGATCGCCTCTACCGCGCTTCCGCTAGACCTGCCCGCATGCGATTATTCCTCTTTCTCGCCGATACTCTTCCTTCTCCGCTTCCTGCTTCCACACCGCTCCAACCTGTGATCAAACCCAATAACGTAGATTTCCTCTTTGGTCTCGAGAAGGGCGCTGGCGTCGCCGTTGCAGCTCCGCCAGTTCAGATTCCGCCTGCGGCAGTCAAATTTCATGATCCGGTGCCGGAGCCCGTTGCGCCGCCGCCGGAGTACCAGTCGCGGCTGAATATGAACCCTGTCGACAGGGTTTCGGCTTCGGATCCGAGCGCGATTCAGCGCCAGTTGCAGCAATTGCAAATTGCGGAGAGCGAGCAAGGCGCGTATCGGAGGAAGAGCGAGGAGAATTACCCCGCCGGTGATTATTACGTTCAGAAGCTGCCTGAGAAATTCCCTCCGGCGAATTTACCGGCCAGCGCCCCGGGTTATTGGCCGGAAAAGCATGTTTCCGGCGAAGCATATTCGCCAGCGGTGTCGGCTGCGTCTGGTGGAGGAGATGCGCCGGTTTACATGTTTCCGGCGCCGGGGACGTTTTACCATGCTCCGGTGGTGCGGCCTCCGGCCACCCAAGGATACTACGCGGTGCAGCGAATGGCTTCAGATGGTTACCGTGAAGCGGCGGTGTACGGCGGTGTGACGCCGTCTAAACCGTCGGCTCAGGCTAACTTGGCGCCAGGGCAGCAGCCGGTTAAGGCTCCCGCGTATACGGAAGGATTCGGTGTGATGCGGCCAAGTGGGATAGTGGATAATTCGGGCTCTCCGTACGCACAGGTAGCGTACGATAGTGCAAGTGGGAGACAGGTTTATTACACTGCACCGGCTGGCGTAGTGCACGCCCCTCCGTACCAAGGCATTTTTCCACCGGTCACCTCTGACATGAGACAAACTGCGGTGACGTTGGGTCAAGATGTTAAAGTGTTAAACAAAGTTACTCAAGGCTCAGTGTGA 1377 0.573 MENYSYQSYPDSGDSSPRSREIDFDNPPPPWDEQQQQNYKVKFMCSYGGKIHPRSHDNQLSYVGGETKILAVDRSIKFGALLAKLSALCEAPPQESNGNSLIFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPARMRLFLFLADTLPSPLPASTPLQPVIKPNNVDFLFGLEKGAGVAVAAPPVQIPPAAVKFHDPVPEPVAPPPEYQSRLNMNPVDRVSASDPSAIQRQLQQLQIAESEQGAYRRKSEENYPAGDYYVQKLPEKFPPANLPASAPGYWPEKHVSGEAYSPAVSAASGGGDAPVYMFPAPGTFYHAPVVRPPATQGYYAVQRMASDGYREAAVYGGVTPSKPSAQANLAPGQQPVKAPAYTEGFGVMRPSGIVDNSGSPYAQVAYDSASGRQVYYTAPAGVVHAPPYQGIFPPVTSDMRQTAVTLGQDVKVLNKVTQGSV* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01128 458 PANTHER OS05G0427100 PROTEIN-RELATED 9 314 - -
Lapu6g01128 458 SUPERFAMILY CAD & PB1 domains 56 152 - -
Lapu6g01128 458 MobiDBLite consensus disorder prediction 1 15 - -
Lapu6g01128 458 Pfam PB1 domain 56 149 IPR000270 GO:0005515
Lapu6g01128 458 Gene3D - 61 151 - -
Lapu6g01128 458 SMART PB1_new 55 151 IPR000270 GO:0005515
Lapu6g01128 458 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 60 151 - -
Lapu6g01128 458 MobiDBLite consensus disorder prediction 1 35 - -
Lapu6g01128 458 CDD PB1_UP2 44 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01128 Lapu-Chr6 11253805 11255573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01128 39 149 MAP Kinase Kinase Kinase AT5G57610 45.946 1.55e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01128 - - var:108341806 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01128 6 11253805 11255573 Lapu6g01128 6 11253805 11255573 ECH
Lapu3g02911 3 52158130 52159794 Lapu6g01128 6 11253805 11255573 PCT