Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01102 ATGTATAGAATGGCGAGAAAGAAGATACCGATCAAGAAGATAGACAACATAAACGCTAGGCAGGTAACATTCTCAAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAACTGTCAACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCGGCCACAAGCAAGCTCTTTGAGTACGCTAGTTCAAGCATGCAAGAAATACTTGAAAGGCGTAATCAACATTCAAGTGTTCAAGGATCAAACATTGCATTTACTAGACAACAGCTTGGAAGTGATTCTTTTGACATGCTGCGGCAGGAAATAGAAGATAAGACTCATGAACTGAGTCGGTTGAATGGGGAAGGGCTGCAAGGATTGACAATACAAGAATTGCAGAAACTGGAGGAACTTCTTCAAAGACGTTGGACAACTATTTCAAAACTTAAGGATGAAAAAATTACACAAGAGATGAACAGCCTTAAAACAAAGGAAGCGGAACTTGTGGAAGAGAACCAGAAACTGAAGCAGAAGTTGGTTCGAGAACAAAGGCAATCGTATGAGTCAATTACCAGCAGTTCATCAGATTTTCCTCCAGACAACGGTAGTTCTGACACATCTCTCAAGTTGGGGCTGCGTTTATTTGAATGA 630 0.4095 MYRMARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATSKLFEYASSSMQEILERRNQHSSVQGSNIAFTRQQLGSDSFDMLRQEIEDKTHELSRLNGEGLQGLTIQELQKLEELLQRRWTTISKLKDEKITQEMNSLKTKEAELVEENQKLKQKLVREQRQSYESITSSSSDFPPDNGSSDTSLKLGLRLFE* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01102 209 Gene3D - 16 84 IPR036879 GO:0003677|GO:0046983
Lapu6g01102 209 ProSiteProfiles MADS-box domain profile. 4 64 IPR002100 GO:0003677|GO:0046983
Lapu6g01102 209 CDD MADS_MEF2_like 5 81 IPR033896 GO:0000977|GO:0045944
Lapu6g01102 209 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Lapu6g01102 209 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Lapu6g01102 209 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Lapu6g01102 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 60 IPR002100 GO:0003677|GO:0046983
Lapu6g01102 209 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu6g01102 209 Pfam K-box region 93 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu6g01102 209 Coils Coil 151 178 - -
Lapu6g01102 209 SUPERFAMILY SRF-like 6 82 IPR036879 GO:0003677|GO:0046983
Lapu6g01102 209 Coils Coil 95 115 - -
Lapu6g01102 209 ProSitePatterns MADS-box domain signature. 6 60 IPR002100 GO:0003677|GO:0046983
Lapu6g01102 209 MobiDBLite consensus disorder prediction 177 201 - -
Lapu6g01102 209 FunFam Transcription factor, MADS-box 16 83 - -
Lapu6g01102 209 MobiDBLite consensus disorder prediction 173 203 - -
Lapu6g01102 209 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Lapu6g01102 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 6 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01102 Lapu-Chr6 10992566 11004861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01102 4 209 MADS-box Gene Family AT4G24540 47.321 4.29e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu6g01102 K-box 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01102 - - gmx:100779453 306.605