Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01100 ATGGAGGGTCACGGAGGAGGAGGGAGTAGAGGGGAAGCGGAGCGCTGGCTGTACACGGCCAACAAGGTTTTAAGCGCACGTGACTTACACGGGGCTCGCTCATTTGCCATTCGGGCCAGAGAATCCGACCCGAGATACGAGCCCACCCAGCTTCTTTTGACGGTTATCGATACTCTCATGGCCGGCGAGGCCCGGATCAACGACCACCTCGACTGCTACGCCATCCTCCAAGTCCTCCGTTACACTCAGAACATCGACTACATCGCTGCCCAGTACCGCCGCCTCGCCACCCAGCTCGACCCTCACCACAACCCATTTGCCTTCGCCGCTCACGCCTTCACTCTCGTCAACGACGCCTGGTCCGTACTCTCCAACTCCACCAAGAAAGCATTCTACGACAACCAGCTCAGACTCCTCACTCAACCCCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCACTGCCGCAACCTCCCGCTCCTCCGGTTACCTTCTTCCCGATTCAACCTCCGCAACCGAACCTAAACCCGACCCCGACCCCGTACCGAGTCCCGCAGCGGGAAAGAAGCCCCAGGCCTTGGGTAGAGGTGGAGGCGCCGAGTCAGGAGGACAATGCGAGTGAGTTGACTCGGGAGAGCGAGACCGGGAGCGAAGGGGCGAGTTTCTGGACCGCTTGCCCTTATTGTTACGTTATGTACGAGTATCCGAAGGTGTACGTGGATTGTACGCTGCGGTGTCAGAGTTGTCGGAGGGGGTTTCATGCGGTGGTGGTACGGTCGCCGCCGAAAGATGGTTTGGGTTCGTTTTCCAGTTGGGGTTTTTTCCCTGTGGGGTTTTCTGGAGATTTTAAAGACATCAGCGGTTCTTCTTCCAACTGGAACCCTTTTTCCCCTTTGATTCCTTGCGCTTTCAAAGGGGAGGAGGAGCAGAGTAGGAAGCACCAGAAGCGGCCTTATGTTTTCTACGACGACGACGCGTCTGCGGAGTTCGCGGAGGGTTCCGACACGACGGAGGATGATTCAGATGATGATGATTGGCATGGCGGGAATCAGAAGGGGATGGTGACGGTGACGAAGAGGAGGAGAAAGAGGGGGAGGAAGAGAAGCAATGGTGGTGGTGATGTTAGGAGGGTACCGATCGAGAGGCCTAGGAGAGGGGCTCATAATCATAGTGGTGGTGCTGGCAATGTTATTGGTAATGTGGAGAATGGTGAGGTTGCGGATGGTGATGCTGTTGCGGCGGTGCCAGAATATAGTAAGAAGGCTGCGTTGGGTGGTTCGAGGAGGAGGAGTGAGAGGAACTTGGGAAAGTTGGATTTGAATGTAGAGTTCAGCAATGAGGTGGAGGAGCCTTTGCATGGAGTGGATGAAGGGAATGAAAACGGGACTGGGAACGCTGAGGATAATATTGAAGGGATTGGGTTTTTTGAGGGGCTGGACGAGTTCCTTAGTAGCTTGCCCATTCTCAATGTTGTTGCAGATGACAAGGTTAAGGGTCATTAG 1500 0.5587 MEGHGGGGSRGEAERWLYTANKVLSARDLHGARSFAIRARESDPRYEPTQLLLTVIDTLMAGEARINDHLDCYAILQVLRYTQNIDYIAAQYRRLATQLDPHHNPFAFAAHAFTLVNDAWSVLSNSTKKAFYDNQLRLLTQPPPPPPPPPPPPLPQPPAPPVTFFPIQPPQPNLNPTPTPYRVPQRERSPRPWVEVEAPSQEDNASELTRESETGSEGASFWTACPYCYVMYEYPKVYVDCTLRCQSCRRGFHAVVVRSPPKDGLGSFSSWGFFPVGFSGDFKDISGSSSNWNPFSPLIPCAFKGEEEQSRKHQKRPYVFYDDDASAEFAEGSDTTEDDSDDDDWHGGNQKGMVTVTKRRRKRGRKRSNGGGDVRRVPIERPRRGAHNHSGGAGNVIGNVENGEVADGDAVAAVPEYSKKAALGGSRRRSERNLGKLDLNVEFSNEVEEPLHGVDEGNENGTGNAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01100 499 MobiDBLite consensus disorder prediction 355 369 - -
Lapu6g01100 499 Gene3D DnaJ domain 60 141 IPR036869 -
Lapu6g01100 499 Pfam DnaJ domain 71 133 IPR001623 -
Lapu6g01100 499 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 368 - -
Lapu6g01100 499 MobiDBLite consensus disorder prediction 370 387 - -
Lapu6g01100 499 MobiDBLite consensus disorder prediction 137 213 - -
Lapu6g01100 499 SMART dnaj_3 70 128 IPR001623 -
Lapu6g01100 499 MobiDBLite consensus disorder prediction 139 185 - -
Lapu6g01100 499 SUPERFAMILY Chaperone J-domain 65 137 IPR036869 -
Lapu6g01100 499 MobiDBLite consensus disorder prediction 330 398 - -
Lapu6g01100 499 CDD DnaJ 71 125 IPR001623 -
Lapu6g01100 499 ProSiteProfiles dnaJ domain profile. 71 136 IPR001623 -
Lapu6g01100 499 ProSitePatterns Nt-dnaJ domain signature. 113 132 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01100 Lapu-Chr6 10978817 10981037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01100 12 498 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 38.659 2.94e-90 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01100 - - gmx:100778926 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02877 3 51750455 51752295 Lapu6g01100 6 10978817 10981037 PCT