Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01091 ATGTCTCACTCCGACACCAAGAAGAAGAAGCAGCAGCGCAGCACCGGCAAGACGGAAGAAGAACAGGCAGGCAAAGACGATGGTTTGATGATAAAGCCTCAGAGCTTCACTCCCCCCATTGACACCTCCCAATGGCCCATTCTCCTCAAAAACTACGACCGCCTCAACGTCCGCACCGGCCACTACACCCCCATCCCCTCCGGCTACTCTCCCCTCAAACGCCCCCTCCCCGAATACCTCAAATACGGAGTCATCAACCTCGACAAGCCCGCCAACCCCTCCTCCCACGAGGTCGTCGCCTGGATCAAGCGCCTCCTCCGTGTCGAGAAGACTGGCCACTCCGGTACCCTCGATCCCAAGGTCACCGGCAACCTCATCGTCTGCATCGACCGCGCCACTCGCCTCGTCAAGTCCCAGCAGGGCGCCGGCAAGGAATATGTCTGCATCGCTCGCCTCCACTCCGCCGTCCCCGACGTCTCCAAGGTCGCACGCGCCCTCGAGACCCTCACCGGCGCCGTCTTCCAGCGCCCGCCCTTGATCTCCGCCGTCAAACGCCAGCTCCGCATTCGAACCATCTACGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCACTTGGTTGTTTTCTGGATTTCATGTGAGGCTGGGACCTATGTTAGGACTATGTGTGTCCATTTGGGGTTGCTTCTTGGTGTGGGTGGCCATATGCAAGAGCTTAGGAGGGTTCGCTCTGGGATCATGGGTGAGAAGGATAACATGGTGAGCATGCATGATGTCATGGATGCTCAGTGGGTTTATGATAATTATAGGGATGAGAGTTATTTGAGGAGGGCTGTTATGCCCTTGGAGGTTCTTTTGACTAGCTATAAGAGGCTGGTTGTTAAGGACTCTGCTGTTAATGCTATTTGCTATGGTGCTAAGTTGATGATTCCTGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGGTTGTGCTTATGACCACCAAGGGGGAGGCTATTGCTCTTGGTATTGCTGAGATGACAACTGCTGTTATGGCCACTTGTGATCATGGAGTTGTGGCCAAGATCAAGAGGGTTGTCATGGACAGGGATACTTATCCAAGGAAATGGGGGTTGGGACCTAGGGCTTCCATGAAGAAGAAGCTTATTTCTGAAGGGAAGCTGGATAAGCATGGGAAGCCCAATGAGAAGACTCCCCAGGAGTGGCTTAGGAATCTTGTTTTGCCCACTGGCGGGGATAGTGTGATTGCTGGTATGGCTGCTGCGCCGGAACCTGAGGATGAGAAGGTCAAGAAGGATGGAGATGGGGAAGGACGGAAGAGGAAGAAGCATGAAAGCACTGATAGCCCTGTTTCGGTTCCTGCTAAGAAGATCAAGGTGGATGTAGAAGAGGTAAAGATGAAGGTAACTGATGAGGCTGTGGAGGTTGAAGTTGACAAGAAAGAGAAGAAGAAGAAAAAGAAGAAGGACAAGGATAACAGTGAAGTGGCCTCTTCGGACGAGGAGAAAACTGAGAAGAAGAAGAAGCACAAGGATAAGGTTGAAGATGGTTCACCGGAGTTAGACAAATCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGAAGCTGCTGCTGCTGCTGCTGAAATTAGCAATGGAAAGGAGGATGACAGTAATGCTGACAAGAGCGAAAAGAAGAAGCACAAGAAAAAGAAAAACAAAGATGCCGAGGAAGAATAG 1728 0.5127 MSHSDTKKKKQQRSTGKTEEEQAGKDDGLMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLPEYLKYGVINLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDESYLRRAVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGMAAAPEPEDEKVKKDGDGEGRKRKKHESTDSPVSVPAKKIKVDVEEVKMKVTDEAVEVEVDKKEKKKKKKKDKDNSEVASSDEEKTEKKKKHKDKVEDGSPELDKSEKKKKKKKDKEAAAAAAEISNGKEDDSNADKSEKKKHKKKKNKDAEEE* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01091 575 MobiDBLite consensus disorder prediction 427 453 - -
Lapu6g01091 575 Pfam tRNA pseudouridylate synthase B C-terminal domain 220 286 IPR032819 -
Lapu6g01091 575 MobiDBLite consensus disorder prediction 460 541 - -
Lapu6g01091 575 SUPERFAMILY Pseudouridine synthase 42 287 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lapu6g01091 575 MobiDBLite consensus disorder prediction 1 27 - -
Lapu6g01091 575 SMART pua_5 290 364 IPR002478 GO:0003723
Lapu6g01091 575 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 5 561 IPR004802 GO:0006396
Lapu6g01091 575 MobiDBLite consensus disorder prediction 1 34 - -
Lapu6g01091 575 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 49 374 IPR004802 GO:0006396
Lapu6g01091 575 CDD PUA_Cbf5 288 362 - -
Lapu6g01091 575 ProSiteProfiles PUA domain profile. 289 364 - -
Lapu6g01091 575 MobiDBLite consensus disorder prediction 419 575 - -
Lapu6g01091 575 NCBIfam uncharacterized domain 2 284 361 IPR004521 GO:0003723
Lapu6g01091 575 FunFam H/ACA ribonucleoprotein complex subunit CBF5 75 281 - -
Lapu6g01091 575 SMART DKCLD_2 41 99 IPR012960 -
Lapu6g01091 575 SUPERFAMILY PUA domain-like 289 370 IPR015947 -
Lapu6g01091 575 Gene3D Pseudouridine synthase 75 281 - -
Lapu6g01091 575 Pfam DKCLD (NUC011) domain 42 99 IPR012960 -
Lapu6g01091 575 Gene3D PUA domain 42 373 IPR036974 GO:0003723
Lapu6g01091 575 Pfam TruB family pseudouridylate synthase (N terminal domain) 103 219 IPR002501 GO:0006396
Lapu6g01091 575 Pfam PUA domain 290 362 IPR002478 GO:0003723
Lapu6g01091 575 CDD PseudoU_synth_hDyskerin 81 263 - -
Lapu6g01091 575 Coils Coil 555 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01091 Lapu-Chr6 10878311 10880296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01091 1 462 NAC Transcription Factor Family AT3G57150 84.416 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01091 K11131 - gmx:100806355 882.093