Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01090 ATGGGTCTGCGTCATCTCACAAAGTTGATGACGCCGTATCCAGAACTCTGTGCCTCACTTTGTCATGTGAAGGAGATTGCACCTTGTCCACCAGATTGCAAAGTCTGCCTCAAGATCTGCCTCACCAATCCCCTATACCCTAATTATGATTCGCCTCCAGCGCCGCCGCCGCCACAACTTCCTCCTTTCATTCTAGATAACGGTGGCGCAGATGAACCAAGCAGCCACAAAATCGCCACCTATTTGTTCCTTGCTCTTGCTATTCTAACTGCTGCTTTCTTTGTCGTTTGTTGTCGCACCATCTATACCAGGTTTAGCTCAAGGAGGAGGGTATCATCAAGGCACCACCCACAGAACACTGGTGGTGACGATGATTTTGTCGATGAAGAGCATGGACCTGTGGTGGATCACCCCATATGGTATATCCGCACCCTTGGTCTTCAGCAATCGATTATCAATGCCATCACAGTTTGTAGGTATAAGAAAGGAGAGGGCTTGATTGAAGGAACTGAGTGTGCTGTTTGCTTGACTGAGTTTGAAGAGGATGAGAATCTCAGACTTTTGCCAAAATGCTATCATGCTTTTCATTTACCTTGTATCGATACCTGGCTTAGGTCTCATACCAATTGTCCCATGTGCCGGGCTCCCATTGTTTCTGACCTTGCAACTGCTAGGTTGGACTCCAGTTTTGTTGATTCAAATTCCTTTGGACAGACCCATGAGGAAATTTTGGAAAATAGTGCTCCTGATTCTGATGAATTGGGGAATAGGGCAGAGGAAGGAGGCCAAGTGGAGGCTGAAGATGGAGTTAGGATTTGTGAAACTCAAACCCCAGTTGAAGATGTGCCAGGCATTCTTCCTAGAAGATCTGTTTCTCTGGATTCCTTTTCTATTGCAAATATCAATCGTGCTCTTGCAACACTGGGATCTAATGGCAACTCAAAAAGAGTGCTGGAAGGCGTGGATGATGCTGATTCTGCTTCTTCAAAGGGGGGTTTTGGAAACGATTTGGCGGCCACTTCCAAAGGTAGCTCTTCTTTCAGGTTAACTAGGTATCTGCAGGGTGCTCCTAGTTCTTCAATGAAAAGGTCACAGTCCTACAATGGAAAGTACCTTCTATCCTGGTACGGTCGCAATCAGAAGAAGCCAAATGCTCCTCTGAGAAGCTTTTAA 1173 0.4621 MGLRHLTKLMTPYPELCASLCHVKEIAPCPPDCKVCLKICLTNPLYPNYDSPPAPPPPQLPPFILDNGGADEPSSHKIATYLFLALAILTAAFFVVCCRTIYTRFSSRRRVSSRHHPQNTGGDDDFVDEEHGPVVDHPIWYIRTLGLQQSIINAITVCRYKKGEGLIEGTECAVCLTEFEEDENLRLLPKCYHAFHLPCIDTWLRSHTNCPMCRAPIVSDLATARLDSSFVDSNSFGQTHEEILENSAPDSDELGNRAEEGGQVEAEDGVRICETQTPVEDVPGILPRRSVSLDSFSIANINRALATLGSNGNSKRVLEGVDDADSASSKGGFGNDLAATSKGSSSFRLTRYLQGAPSSSMKRSQSYNGKYLLSWYGRNQKKPNAPLRSF* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01090 390 SMART ring_2 172 213 IPR001841 -
Lapu6g01090 390 FunFam RING-H2 finger protein ATL54 147 220 - -
Lapu6g01090 390 CDD RING-H2_EL5-like 171 214 - -
Lapu6g01090 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 221 IPR013083 -
Lapu6g01090 390 SUPERFAMILY RING/U-box 166 221 - -
Lapu6g01090 390 ProSiteProfiles Zinc finger RING-type profile. 172 214 IPR001841 -
Lapu6g01090 390 Pfam Ring finger domain 171 214 IPR001841 -
Lapu6g01090 390 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 74 221 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01090 Lapu-Chr6 10875065 10876521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01090 78 272 C3H Transcription Factor Family AT1G72220 46.535 2.97e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01090 - - vun:114186636 635.95