Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01083 ATGCATGAAGGGGAGAGAACGTACATATGCCAAAAATGCAAAAACAGCTTCCCAGTTCATCCTTTGGTGGAAGCTCGAAACTCCATATCATTACCTCCAATTTGCCCAATTCAGAATTCCAAGCCCTGTGGAGGCACAAAATTCCAGTATGTAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTAGAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTGTCTTAACGGCAAAGTGGGCTGCAGAGTTGAAGGATGTGCGTTGTGACCTTGATCCTGTATTGATTGCCAACAATTTAGTAGGGAGGGTCAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATTGTCATGAAATTCAAGCAGTTTTGGGCTCAATTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATTCTACGAGGAATTTGCCCGCAAGTATTTGGCCTTTTCACTGTCAAGCTGGCTGTTGCATTAACTCTTATTGGAGGTGTGCAACATGTCGATGCTTCTGGAACAAGGATAAGAGGAGAGTCTCACTTACTATTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGATCTGTTATTACCACTGGATTGGGAAGCACGAGTGCTGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTGGAAGCTGGAGCTCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAGCATGATAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACCACACTAAGCACTAGAACAACTGTATTTGGTGCCACAAATCCCAAGGGACAATATGATCCAGATCAACCTCTGTCTGTCAATACAACGCTCTCTGGTCCTTTATTAAGCAGGTTCGATATTGTCCTTGTTCTATTGGACACAAAAAATCCTGATTGGGATGCAGTGGTTTCATCTCATATTCTTTCTGAGGCAGAACCGGATAGCACCACTAATGACGAAGATCTGGTAAATAGCTGGCCTCTTTCTACACTCAAGAGGTACATACACTATGTGAAGGAACATTTCAGACCAGTCCTAACGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTCATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCACAAGCCCATGCAAGGCTGATGTTCAGAAATGAGGTGACGCGACTAGATGCCATAACGGCTATTTTATGCATAGAATCATCCATGACTACCTCAGCTATCGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATTCACGTGGATCAATTAA 1506 0.425 MHEGERTYICQKCKNSFPVHPLVEARNSISLPPICPIQNSKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILEDDLVDVVKAGDDVIVTGVLTAKWAAELKDVRCDLDPVLIANNLVGRVNELKSEIDISDDIVMKFKQFWAQFKDSPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRIRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAEPDSTTNDEDLVNSWPLSTLKRYIHYVKEHFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEFTWIN* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01083 501 Gene3D - 59 107 IPR012340 -
Lapu6g01083 501 PRINTS Mini-chromosome maintenance (MCM) protein family signature 205 220 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g01083 501 PRINTS Mini-chromosome maintenance (MCM) protein family signature 291 304 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g01083 501 PRINTS Mini-chromosome maintenance (MCM) protein family signature 263 277 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g01083 501 PRINTS Mini-chromosome maintenance (MCM) protein family signature 341 349 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g01083 501 Pfam MCM P-loop domain 166 369 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g01083 501 SUPERFAMILY Nucleic acid-binding proteins 6 113 IPR012340 -
Lapu6g01083 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 481 IPR027417 -
Lapu6g01083 501 SMART AAA_5 206 355 IPR003593 GO:0016887
Lapu6g01083 501 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 477 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lapu6g01083 501 FunFam Probable DNA helicase MCM9 142 476 - -
Lapu6g01083 501 Pfam MCM AAA-lid domain 390 471 IPR041562 -
Lapu6g01083 501 ProSiteProfiles MCM family domain profile. 164 367 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lapu6g01083 501 Gene3D - 139 477 IPR027417 -
Lapu6g01083 501 SMART mcm 1 473 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lapu6g01083 501 CDD MCM9 167 471 - -
Lapu6g01083 501 Gene3D - 7 58 - -
Lapu6g01083 501 Pfam MCM OB domain 7 106 IPR033762 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01083 Lapu-Chr6 10812548 10823095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01083 1 496 Core DNA Replication Machinery Family AT2G14050 80.242 0.0 836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01083 K10738 - gmx:100776255 925.235