Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01081 ATGGAAAACGACGACGATGTCGACATGCACGCAGCCGACGCCAATGAAGAATTGGATGACATGAAGAAGCGCTTGAAAGAAATGGAGGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTGCAAGATCCTGGAACTGCTTCGGCGAGTCAGACCAATAGAGAGGAAATAGATTCTCGATCAGTCTTTGTGGGCAATGTGGACTATTCGTGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGTCAACCCAAGGGTTATGCCTATGTTGAGTTCCTTGAGGTGGAAGCGGTTCAGGAGGCCCTTTCGCTGAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTGACAGCTAAAAGGACCAATATACCAGGGATGAAACAGTATCGATCCCGCCAGTCAAATCCTTACACAGGGCCCTTTCGAGGCAGAACACCATATGCACCTCCCTTTATCTATTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGGTACAGCCCCTACTATTAA 594 0.4731 MENDDDVDMHAADANEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPGTASASQTNREEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRSRQSNPYTGPFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01081 197 MobiDBLite consensus disorder prediction 51 65 - -
Lapu6g01081 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Lapu6g01081 197 CDD RRM_II_PABPs 69 140 - -
Lapu6g01081 197 SMART rrm1_1 69 140 IPR000504 GO:0003723
Lapu6g01081 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 9 167 - -
Lapu6g01081 197 Gene3D - 4 141 IPR012677 -
Lapu6g01081 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Lapu6g01081 197 MobiDBLite consensus disorder prediction 43 65 - -
Lapu6g01081 197 SUPERFAMILY RNA-binding domain, RBD 57 167 IPR035979 GO:0003676
Lapu6g01081 197 Coils Coil 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01081 Lapu-Chr6 10797112 10802784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01081 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 4.87e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01081 K14396 - gmx:100791351 366.696