Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01074 ATGGAAGCCGCAGCGTTGAAATTGGAGTCCCTTGCGTGCATAGACTCCACCACTCTCTCTCACTCCGAGCTTCTCGCCCTTTCTCTTTCCTCTCTCTGCGCCTTCGACCTTCGCGCCACCAATGACCTCGTCACTCCCAAGATCGACCCCGCGCTCTTCAACGAGAGCGCCGGCTCCCGCCGCCAGACCTACTCCCGCCCCCAGTCCTCGCCGACGGGGCGCCGCCGCCGTCTCGCCGGCCTCCTCCCTGCCCCCAAGCTACCTCCCCTCCCCGCTCACAACCCCGAGAACGCTGAAAACCGCCTCATCATTGACTACCTAAAGCAACTCATCAGAGAGGATCCCAAGTTCGACCAGGTCCACCTCGCCCCCCATTCTCTTCCCCAACCCACCGTCAAGCGCAAGCGAGGCCGCAAGCCCAAGCTCAAACTCCACCTGGAACACTGCTACCGCGGAATCGACATTCTTAACCAAAAGGGTGTCGCCATTGATCTGTCGCAATTGGCCACCTCCCAAGACCCCTTCGCCGATGAGCTCAAGAGACGCACACAGGGTTTGAACAACGAAGAGGAGCTGTTAGGGTTTTTGAGGGATTTGCCTGGCCAGTGGGGGAGTCGTAGGAAGAAGCGCAGGATTGTTGATGCCGCGGATTTCGGCGATGTGTTGCCGGTTAGTTGGAAGATTCTTCTCGGTTTGAAGAGGAAGGACGGTCGTGCGTGGATCTATTGCCGCAGATACATTAGGGCTTATCGTGTATTTGATATTCCACCGTGCAGCCCCAGCGGACAGCACTTTGTGTCTTGCAAAGAGGTTTCTTCGTATTTACAGTCTCTTCTGGGTAATGGTGATGCACAGTTGCAAAGTAGTCGTAGGAGTGAAAATGTAGTGCAGGAGCAGATAGTGCCTGCTGAAAATTCTGCTGGTGTCACCCCTGAGCGTCAAGACCAGAGACCCACCGTTGCCACGGAGATGCCTGGTTTGTTTGGGGCTGCTAATGAACGAGTAAGGGAGGTTGCCTTGTTGGGGATTGAAAATCTTGCGGATGTACAGATTCATGATCTGTTTGAATGTCGCAAGTGCAATATGAGTTTTGACGAGAAGGATTCATACTTGCAGCACCTGTTGTCAGTTCACCAGAGGACGACCAGGAGGTACCGTCTTGGTTCGTCGGTTGGAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTTTGGAAAGGCGTCGCTACAATGGTCATGTGGGGATTCATGTTAGGAATTATGTGAGGAGAGTCGACGATTCACCAGGTCAGACAAATGTCCAGAGGACAGATGACAAATCTCCAGTCAGGGAGGACGTGCCCTTAAGGATATCTAAGATGGATGCCCTCATTGAAATTGCTCAAAATTCTATTATGGAGGGTTCTGTCCCGGCACCCCCAGGACCCCATCAATTAGCTAAACCGAACTGGATTCCTGCCTCAGATATTGCTGCTGGTTACATGGATCAAGACGGAAACTCTCAGTCTCCAATCGGTGAAAAGAAGATGGAAGATAGCTTGACTAAAACTAATGTGGATCATCATGATATGGACGGAAAAGTAGAGGAAATTGATGATGATAACCATGTGATAGATGTAAAAATGGTTACTTTTCTTGATAACATGGGTTTGTTATCTGTAAATAATCAAGATGTTAAAGCATCTGGGACTTCTGACGTTAAAGATGATGTGGAATTGACTATTGAGGAACTGGATCAATCTGGGATTGATTTGGATGGTGTTTCTGAGGTCCGTTTACTTCCTTTATCTGAACTTAACATGATACCAGAATCTGAAAAGAGTGAAAATTCTGGATGTTCTAATGCTAGGGTTCAGTTTAAACTTGATGAAGACACTGGTAACAATAGTGAGTTGGAATTTGGTTTAAATTGCTTGAAGGATGTACCTGTTACTGTTAGCACTGATGTTGAGATGGTAATGGCAGCTTCTGAAGAAAATGTGGAACATTCTAGGGCTTTTAACTCATCTATATCCACAGAACAATTGGATTCTTTGACTGCATTCAGCTCTGATAAGGGAGGAAAACAGTTTTCCAGTCTTGACAATGAACATGATAATGTGAAGGGTCTCCAGGAATTGAGGTTTGATGAAATAGATAATGTCGATTATGATTTTGCAAGGGTTCAGGATTCTCCTACTCTGCCTGCTGTACCAACTGAATTGGCCAATAACAGAGTGATGGAAGAGACGTATGCATCCTCAGTTCCGTTTCAATCACATGAGGATATGCTAAATATCGGTGGCAGAGATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAAGCAAAAATCTCTGGTCAAATCAACGTCTTGGACTGTGAATCGCCAAATGGTGGCTGTCTGTAG 2481 0.474 MEAAALKLESLACIDSTTLSHSELLALSLSSLCAFDLRATNDLVTPKIDPALFNESAGSRRQTYSRPQSSPTGRRRRLAGLLPAPKLPPLPAHNPENAENRLIIDYLKQLIREDPKFDQVHLAPHSLPQPTVKRKRGRKPKLKLHLEHCYRGIDILNQKGVAIDLSQLATSQDPFADELKRRTQGLNNEEELLGFLRDLPGQWGSRRKKRRIVDAADFGDVLPVSWKILLGLKRKDGRAWIYCRRYIRAYRVFDIPPCSPSGQHFVSCKEVSSYLQSLLGNGDAQLQSSRRSENVVQEQIVPAENSAGVTPERQDQRPTVATEMPGLFGAANERVREVALLGIENLADVQIHDLFECRKCNMSFDEKDSYLQHLLSVHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVDDSPGQTNVQRTDDKSPVREDVPLRISKMDALIEIAQNSIMEGSVPAPPGPHQLAKPNWIPASDIAAGYMDQDGNSQSPIGEKKMEDSLTKTNVDHHDMDGKVEEIDDDNHVIDVKMVTFLDNMGLLSVNNQDVKASGTSDVKDDVELTIEELDQSGIDLDGVSEVRLLPLSELNMIPESEKSENSGCSNARVQFKLDEDTGNNSELEFGLNCLKDVPVTVSTDVEMVMAASEENVEHSRAFNSSISTEQLDSLTAFSSDKGGKQFSSLDNEHDNVKGLQELRFDEIDNVDYDFARVQDSPTLPAVPTELANNRVMEETYASSVPFQSHEDMLNIGGRDQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQINVLDCESPNGGCL* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01074 826 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 602 IPR037472 -
Lapu6g01074 826 SMART c2h2final6 355 378 IPR013087 -
Lapu6g01074 826 SMART c2h2final6 402 424 IPR013087 -
Lapu6g01074 826 MobiDBLite consensus disorder prediction 55 75 - -
Lapu6g01074 826 ProSiteProfiles Zinc finger C2H2 type domain profile. 402 429 IPR013087 -
Lapu6g01074 826 MobiDBLite consensus disorder prediction 56 72 - -
Lapu6g01074 826 ProSitePatterns Zinc finger C2H2 type domain signature. 404 424 IPR013087 -
Lapu6g01074 826 ProSitePatterns Zinc finger C2H2 type domain signature. 357 378 IPR013087 -
Lapu6g01074 826 Gene3D Classic Zinc Finger 345 427 - -
Lapu6g01074 826 ProSiteProfiles Zinc finger C2H2 type domain profile. 355 383 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01074 Lapu-Chr6 10739875 10745040 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g01074 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01074 - - var:108341719 1209.9