Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01068 ATGTCGTCGTCTCTTTCATTTCCGATTCTAATTCCGTTCGCAATGGATTCTCCGTCGTGTGTGGCGGTGACTCATATGGCACTTTCCAAACCTCTGAAGCACTACCGTCCTTTTTTCATGGGTAGAGTCAGAGTTAGACCGCTTCATCGCCGCCTCAACACCGTTATGCCGTTCCGGTGCTCTTCCGCTGCGGAAGATGCCGTCATCACTCTCCACGTTGGGGGAATGATGTGCGAAGGATGCGCTAATAGCGTCAAAAAACTTTTAGAAAGCCGACCTCAAGTGTTATCTGCTCGTGTAAATTTGACATCCGAGCTAGCAATTGTTTCGCCTACACCTGAAGAAAAAGCGGCACCAAATTATCTAAAGCAATTAGGGGAGGAACTTGCACAGCATTTAACTGCCTGTGGTTTTACTTCTACCCTTCGAGGAAAATTAGCTTGTCTTTCACCAAAATCGGAGAACATTGTTCCACGCTTTGAATATATGTTGGATGGGTCTTCTAAGGTTCCAACTTTGCTGCACTACGCGAAGTGTAAGGAAGACATACACCAAAGGTTCCCATCACTAATATTTGTAGCGAGCAATATTTTGATGTTCTCTATGCCTAATACTGCTTTGGCTGAAACTTGTGAGGCTGATAACTCTTTTTTCAATATGCCTATATTGCTAGGAGTAGCTCTCATTGGAGCCACAGTTGGAGGGTTGCTTGCTCGACAAAGAAGAAATGAATTACAACGGGTAAACGAGCAATTAATCCAAATCAATGCAGCATTAAGGAAACAAGCCAAAATCGAGTCTTATGCCCCTAGTTTGAGTTATGCTCCCATTGGTGGTGGTAGGATACCTGATAATGAAATTATTGTTGACCCAAAGAAGCAAGAGCTAATTTCTAAGTTGAAAAATGGAAAGAACTTTCTAAGGAATCAACAGTTGGATAAAGCATTCATAGAGTTTAAAAATGCACTTGGGCTTGCCCAAAATTTGAAGGATCCTATCGAAGAGAAAAAAGCTGCCAGAGGTCTAGGAGCCTCATTGCAAAGACAAGGAAAGTATCGAGATGCTATTAAATACCATTCCATGGTTTTAGCCATCTCTGAACGAGAAGGGGAGGACTCGGGGAATACAGAAGCGTTTGGGGCAATTGCAGATTGCTACACTGAGCTTGGAGAGCTTGAGAAAGCAGGCCAATTCTATGACAAGTATATTGCAAGACTGGAAAAGGACTAA 1230 0.4309 MSSSLSFPILIPFAMDSPSCVAVTHMALSKPLKHYRPFFMGRVRVRPLHRRLNTVMPFRCSSAAEDAVITLHVGGMMCEGCANSVKKLLESRPQVLSARVNLTSELAIVSPTPEEKAAPNYLKQLGEELAQHLTACGFTSTLRGKLACLSPKSENIVPRFEYMLDGSSKVPTLLHYAKCKEDIHQRFPSLIFVASNILMFSMPNTALAETCEADNSFFNMPILLGVALIGATVGGLLARQRRNELQRVNEQLIQINAALRKQAKIESYAPSLSYAPIGGGRIPDNEIIVDPKKQELISKLKNGKNFLRNQQLDKAFIEFKNALGLAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMVLAISEREGEDSGNTEAFGAIADCYTELGELEKAGQFYDKYIARLEKD* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01068 409 Coils Coil 238 262 - -
Lapu6g01068 409 FunFam Copper-transporting ATPase PAA1, chloroplastic 67 142 - -
Lapu6g01068 409 ProSitePatterns Heavy-metal-associated domain. 73 102 IPR017969 GO:0046872
Lapu6g01068 409 Gene3D Tetratricopeptide repeat domain 291 409 IPR011990 GO:0005515
Lapu6g01068 409 Pfam Heavy-metal-associated domain 70 137 IPR006121 GO:0046872
Lapu6g01068 409 Pfam Tetratricopeptide repeat 339 408 - -
Lapu6g01068 409 SUPERFAMILY TPR-like 303 404 IPR011990 GO:0005515
Lapu6g01068 409 ProSiteProfiles Heavy-metal-associated domain profile. 67 134 IPR006121 GO:0046872
Lapu6g01068 409 Gene3D - 65 144 - -
Lapu6g01068 409 PANTHER PROTEIN FLUORESCENT IN BLUE LIGHT, CHLOROPLASTIC 174 409 IPR044243 GO:0015995|GO:0033014
Lapu6g01068 409 CDD HMA 70 141 IPR006121 GO:0046872
Lapu6g01068 409 SUPERFAMILY HMA, heavy metal-associated domain 67 124 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01068 Lapu-Chr6 10678680 10683093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01068 68 143 Primary Pumps ATPases AT4G33520 64.474 3.60e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01068 - - vra:106775694 731.095