Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01054 ATGGATGTTCTCAGCTTTACCTCAAACCTTAGCAGCACTCACATGGCTCCACTCTCAAAAAAACAGCAAACACAAGCTCCTCGTACCAAGTTTTGTGTTTCATGCAGAGCCACAAAACAGCATCCGGGTGTGGAGGAGAACCTGTACAAGGTACTGAGTTTGAGCCCCATCAGTGCAACCACAGACGACATAAAGAAAGCGTATAGATCGATGGCTCTTCAGTACCACCCTGATGTGTGCCATGATGGTTCGAAGAAGGAGGAGTTGACGAGGATGTTTGTGCAACTGAACGCAGCTTACACCACCTTGTCCAACCCACAGCTTCGAGCAGATTATGACTACGAGTTGGGTTTGAGAAGCAAGAAAAGTGTGAGTGATGAGAGTTGGAGATGTAGGTGGCAGGAGCAAGTGGTTGAGTTGAAGAGAAAGTCTCACACACGTATGGCACAAAAGGAGGGATCCTGGGGCTGCAGAGTCAGAGCACAAAACATGAATTGA 498 0.4779 MDVLSFTSNLSSTHMAPLSKKQQTQAPRTKFCVSCRATKQHPGVEENLYKVLSLSPISATTDDIKKAYRSMALQYHPDVCHDGSKKEELTRMFVQLNAAYTTLSNPQLRADYDYELGLRSKKSVSDESWRCRWQEQVVELKRKSHTRMAQKEGSWGCRVRAQNMN* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01054 165 CDD DnaJ 47 105 IPR001623 -
Lapu6g01054 165 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 19 164 - -
Lapu6g01054 165 SMART dnaj_3 46 108 IPR001623 -
Lapu6g01054 165 PRINTS DnaJ domain signature 50 68 IPR001623 -
Lapu6g01054 165 PRINTS DnaJ domain signature 88 108 IPR001623 -
Lapu6g01054 165 PRINTS DnaJ domain signature 68 83 IPR001623 -
Lapu6g01054 165 Gene3D DnaJ domain 35 144 IPR036869 -
Lapu6g01054 165 SUPERFAMILY Chaperone J-domain 40 112 IPR036869 -
Lapu6g01054 165 Pfam DnaJ domain 47 113 IPR001623 -
Lapu6g01054 165 ProSiteProfiles dnaJ domain profile. 47 116 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01054 Lapu-Chr6 10573225 10573722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01054 49 113 C2H2 Transcription Factor Family AT1G74250 43.284 2.31e-07 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01054 6 10573225 10573722 Lapu6g01054 6 10573225 10573722 ECH
Lapu3g02832 3 51213979 51219738 Lapu6g01054 6 10573225 10573722 PCT