Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01022 ATGACCAGAAAGAAGGTGAAGTTGGCATTCATAGCCAATGACTCAGCTAGGAAGGCAACGTTCAAGAAGAGGAAGAAGGGTCTAATGAAGAAGGTGAGTGAACTTAGCACCCTCTGTGGGATTGATGCATGTGCAATAGTTTATAGTCCTTATGATCCTCAACCTGAGGTTTGGCCATCCCCGATGGGGGTTCAAAGAGTGCTTGCCAAGTTCAGGAGAATGCCGGAATTGGAGCAAAGCAAAAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGAATCCTAAAGGCCAAAGACCAGTTGAAGAAACAAAGGAAGGATAATAGGGAAAAAGAGATGACTCAGCTCATGTTTCAGTACCTTAGTGCTGGTAAAATTATGCACAATATAAGCATGGTTGATTTGAATGATCTGGCATGGTTGATTGATCAAAATTTGAAGGACATCAACAGGAGGATTGAGGTGTTGACTAAGAATCCTCAGAGTCAAACTCAAGTTGCAGCACCAGCGGTGACTGATGTTGTTGCCAGGATTGAAGACAAGGGACAAGGGAGTCATAATGGCCAGGGATTTGATATCAACATGGATCTCATGCAGAAGCAGAACTGGTTCATGAATTTGATGAACAATGGCGGTGGCGGGAATGAGACTATGCCTTTCGGAGATGTTAATCACCAAAATGGCTTTTGGCCAAACCCATTTTTCCATTGA 711 0.436 MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPSPMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRILKAKDQLKKQRKDNREKEMTQLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNPQSQTQVAAPAVTDVVARIEDKGQGSHNGQGFDINMDLMQKQNWFMNLMNNGGGGNETMPFGDVNHQNGFWPNPFFH* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01022 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu6g01022 236 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lapu6g01022 236 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lapu6g01022 236 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Lapu6g01022 236 Coils Coil 91 114 - -
Lapu6g01022 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lapu6g01022 236 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lapu6g01022 236 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lapu6g01022 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu6g01022 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu6g01022 236 PANTHER MADS BOX PROTEIN 3 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01022 Lapu-Chr6 10294827 10295537 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01022 1 156 Type I MADS-box Gene Family AT5G48670 68.590 3.37e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu6g01022 SRF-TF 3.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01022 - - gmx:100813231 427.172