Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01021 ATGGTGTTGTCTTGGGCTAGAAGAAACGTTTTCCGTCGTGCCAAGAAGGAGAAGGGACAGATTCAAGGTGGTGAGTTGGAGGTGGAGGTTGTGATCCCCAATCACTTTCGGTGTCCGGTGAGTTTGAAGTTGATGACAGACCCGGTGACTTTATCAACCGGCATCACCTACGATAGGGTGAGCATTGAGAAGTGGATTGAGGGAGGGAACAAGACCTGCCCCGTCACCAAACAGGTGCTGACAACCTTTGAGAACATCCCCAACCATGCCATTCGTAGGATGATTCAGGATTGGTGTGTTGAAAACAGCTCTTATGGGATTCAGAGGATCCCCACTCCTCGTATTCCTCTCTCCAGCTACGAGGTTTCTGAGACGTGTATGAGGATCTTGTTGGCTTGTCAGCGTCGGGATGATAAAAAGTGCCAGGAGTTGGTTGGGAAGATTAAGGTTTGGGGGAGAGAGAGTGAGAGGAACAAGAGGTGCATAATTGGGAATCATGCTAGAATTGATCCTGGTAATGGTGCCTGTGCAGTTCTTGCATATGCCTTTGATTGTTTCTCAAGTGGTGACTCTTTTGACAAGCATGTGGTTGTTTTGGAGGAGATACTGGAGGTGCTGACATGGATGATCCCACTTGGGGAAGAGGGTGTGTCTAAATTGAGTTCAAAAGCTTCATTGAATTGCATGGTTTGGTTTCTAGAGGGGAAAGACCTTGCATCAAGGCAAAGTGCTGCTTTGTTGCTCAGGCAAGTGTGTGCTCAAGAATTGGCCGAAGTTGGAAAAGTTGTTGAAGCTTTGGTTAATATGATTAGGGAGCCTATTGGGAGTGTTTCCACAAAGGCTTGTTTGGCAACAATTTTTAACTTGGTGTCATTATCTGAGAACAGAGGGGAAATTGCTCAAAGATTTGTGGAGTTGGATCTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGAGAAAGGGGTTTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATATCCAAAAGGGGAAGGAGGTTCTTAAAAACAATGCTCTTACTTTGCCTCTTGTTGTTAAGAAGCTTTTGAGGGTGTCACCATTGGCTTCAAGTTTTGCTGTCTCTATTCTTAAGAAGAATACTGACAAGAAAGAGGAAGCGGCTCTAATTGAGGCAGTTCAACTAGGGGCTGTTCAAAAGCTCTTAGTTTTGCTTCAGGTTGGTTGTGATGAGAGCACAAAGGAGAATGCTACAGAGTTGTTAAAACTGTTGAACGGTTATAGGAACAAAGTGGGGTGCACTGACTCATCATCGGATTTCTAG 1311 0.4523 MVLSWARRNVFRRAKKEKGQIQGGELEVEVVIPNHFRCPVSLKLMTDPVTLSTGITYDRVSIEKWIEGGNKTCPVTKQVLTTFENIPNHAIRRMIQDWCVENSSYGIQRIPTPRIPLSSYEVSETCMRILLACQRRDDKKCQELVGKIKVWGRESERNKRCIIGNHARIDPGNGACAVLAYAFDCFSSGDSFDKHVVVLEEILEVLTWMIPLGEEGVSKLSSKASLNCMVWFLEGKDLASRQSAALLLRQVCAQELAEVGKVVEALVNMIREPIGSVSTKACLATIFNLVSLSENRGEIAQRFVELDLVSLLLEAIVDGEKGVCEKALGVLDCICDIQKGKEVLKNNALTLPLVVKKLLRVSPLASSFAVSILKKNTDKKEEAALIEAVQLGAVQKLLVLLQVGCDESTKENATELLKLLNGYRNKVGCTDSSSDF* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01021 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 109 IPR013083 -
Lapu6g01021 436 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
Lapu6g01021 436 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Lapu6g01021 436 SUPERFAMILY ARM repeat 121 423 IPR016024 -
Lapu6g01021 436 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Lapu6g01021 436 FunFam RING-type E3 ubiquitin transferase 32 104 - -
Lapu6g01021 436 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Lapu6g01021 436 SUPERFAMILY RING/U-box 24 108 - -
Lapu6g01021 436 Gene3D - 118 427 IPR011989 -
Lapu6g01021 436 CDD RING-Ubox_PUB 33 84 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01021 Lapu-Chr6 10291629 10293192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01021 24 436 U-box Gene Family AT5G37490 47.619 1.28e-117 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01021 - - var:108327887 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01021 6 10291629 10293192 Lapu6g01021 6 10291629 10293192 ECH
Lapu6g01021 6 10291629 10293192 Lapu7g00123 7 1340502 1342070 PCT
Lapu6g01021 6 10291629 10293192 Lapu6g01021 6 10291629 10293192 PCT
Lapu7g00124 7 1361389 1362627 Lapu6g01021 6 10291629 10293192 PCT