Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01020 ATGAAAGAACACTTTGATCTTGAAGTGGTGGCCTCAGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAACATATCTATTCAAGAAACCTATGCAGGTCCTTGCAGTGACAACCTCACCAACTCTTCCAGTGTCACAAAACCAATAGAACTTCATCTTCATTCAGATGCTATCTCCCTTGACTTAACTCTCAACTTCAATAACAACGAGTTGGTGGTTAGAGATTCAACAGGACTCTCATTCTCAAGCACTACTAGTGAGAGTAGCAACGATCCTCCCTCTCAAACCACGCCACGAGTCTTCTCTTGCAATTACTGTAAGCGCAAGTTTTTCAGCTCTCAGGCTCTTGGTGGCCACCAAAATGCACACAAGAGAGAAAGAACATTAGCAAAGAAAGCCTTGCGCATGGGGTTTTTCTCTGAGAGGTATGCCAGTCTAGCATCTCTCCCTCTTCATGGTTCTTTCAGGTCCTTGGGGATAAAGGCGCACTCTTCACTGCACCACGGCTTTTCACCAACAATGAGGCCTCCTGAGATGAAAAACAGTGCAAGATTTGAGCAAGGATATATTGGTCTTCCAATATTCTTGGAGGAGGATGAGGCAGAACTCTTGTGGCAAGGTAGTTACCATCAGGTTCCCTCTAAGGGAGGCCATACTCATCAGAATTTCACCCTGAGTGGAAGCTCAAATTTGAGTTTTATTGGGGTGAATCATCCACCGGTTGACATACAGAATTCAAAACCTGAGCTGACATTGAAACTTTGA 771 0.4449 MKEHFDLEVVASAEYESEVSSQVASNISIQETYAGPCSDNLTNSSSVTKPIELHLHSDAISLDLTLNFNNNELVVRDSTGLSFSSTTSESSNDPPSQTTPRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKKALRMGFFSERYASLASLPLHGSFRSLGIKAHSSLHHGFSPTMRPPEMKNSARFEQGYIGLPIFLEEDEAELLWQGSYHQVPSKGGHTHQNFTLSGSSNLSFIGVNHPPVDIQNSKPELTLKL* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01020 256 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Lapu6g01020 256 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 48 182 IPR044246 GO:0009788
Lapu6g01020 256 FunFam Zinc finger protein 2 80 149 - -
Lapu6g01020 256 SUPERFAMILY beta-beta-alpha zinc fingers 99 130 IPR036236 -
Lapu6g01020 256 Gene3D Classic Zinc Finger 81 146 - -
Lapu6g01020 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01020 Lapu-Chr6 10285730 10288686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01020 98 256 C2H2 Transcription Factor Family AT1G66140 49.457 3.52e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g01020 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01020 - - gmx:100815175 424.091