Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01015 ATGCCCTTGGAAGGGATTTTCATTGAACCTACTTCAACCTCTACACCTGATCTTTCCCTTCACATAAGTCCCCCAAGCACTTCATCTTCCTCTTCTCTGATTTGCAATAACAGCACATCAGGTGGTGGCACCAATTATGAGGCTCACAATTCAACAAGCACAAATTTCCCTTCTCAAGCTCACACCGAGCTTTCTTTGGGAAGGAATTTCAGTGGTGGAGGAAGAGGAGGTATTGAAGAAGCACCACCGCACAACGGCAACAGCAGCATCAACCCTTATTATCAAACCCAACAAGCTCATTTCCATCATCTTCACCACCATTCTAACTCTGGTAATGCTTCAAAAGCAGCAACAACAACAACAAGCACCACAAGTTCCTCCAATCACTTGAGTCACATAAATTATGGGGTTTCTTTGCTTGATGTGTCGTCAGAAGGATTGAGGCCAATCAAGGGGATTCCGGTGTACCACAACCGTTCATTCCCTTTCTTGCCCATGGAACATTCAGGAGACAAAGATCATCATGCCAAAATGTGTTTATATCATCACATGCCTACATATCCCTCTTTGTCCTCTTCTTGTTCTCCTCTGTGTTCTTCTTCTTCTTTTGCTTCTTCTCCTACACCCTACTTTGCCGCAGCGGCAGGTAACCCGGATCCCATGTCCTATTTGAGCTCAGGTGGGACCACCGTTGCAGCGGCCGCGGCTTATAGGGCTGCCACTGCCACAAGGTTCAATGGGATTTCTGGGGAGGCTTTCAAATCTCATCATCCATTGCACCACCATCACTCATCATCACACTATGGGGTTGGACTTGGAGCCTCTCATGAGGCCTCTTCAGGGTTGATGAGATCAAGGTTTTTGCCAAAGTTGCCAACAAAGAGAAGCATGAGAGCACCGAGAATGCGGTGGACTAGCACACTCCACGCTCGATTTGTCCATGCTGTGGAGCTTCTTGGTGGCCATGAAAGAGCTACGCCAAAGTCAGTTCTAGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTGAAGACCACTGACAAGCCTGCCGCTTCTTCAGGCCTTTCAGATGGATCAGGAGAAGACGACATGTCTCCAATGGGAAGCAGCGGTGGTATGCGTCAATTTTCAGACCAAAGAAGCCTTTCAGATCGACCAGTGCAACAAGACATGGATTACTCTTCGGCCAACACTCTATGGAGTAACTCTTCAAGCAATAGAGAATCATGGCCACAAAACAGTTCCAACGACATAAATGGTTTCCGACCCCCGATTTTCCAGTCACAACAAATATCAGGGGGGCATCAAATTCAGGATTGTGATTCAACCCAACTCAAGAACAGCTTGTCAGCATCAACAAATTTAGAATGCAAGAACCCAAGCTTGGAGTTCACATTAGGAAGACCTGATTGGAATGGCAAAGGACAAGCCTAA 1467 0.4663 MPLEGIFIEPTSTSTPDLSLHISPPSTSSSSSLICNNSTSGGGTNYEAHNSTSTNFPSQAHTELSLGRNFSGGGRGGIEEAPPHNGNSSINPYYQTQQAHFHHLHHHSNSGNASKAATTTTSTTSSSNHLSHINYGVSLLDVSSEGLRPIKGIPVYHNRSFPFLPMEHSGDKDHHAKMCLYHHMPTYPSLSSSCSPLCSSSSFASSPTPYFAAAAGNPDPMSYLSSGGTTVAAAAAYRAATATRFNGISGEAFKSHHPLHHHHSSSHYGVGLGASHEASSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPMGSSGGMRQFSDQRSLSDRPVQQDMDYSSANTLWSNSSSNRESWPQNSSNDINGFRPPIFQSQQISGGHQIQDCDSTQLKNSLSASTNLECKNPSLEFTLGRPDWNGKGQA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01015 488 NCBIfam myb-like DNA-binding domain, SHAQKYF class 300 353 IPR006447 GO:0003677
Lapu6g01015 488 MobiDBLite consensus disorder prediction 110 128 - -
Lapu6g01015 488 MobiDBLite consensus disorder prediction 381 448 - -
Lapu6g01015 488 SUPERFAMILY Homeodomain-like 297 353 IPR009057 -
Lapu6g01015 488 FunFam Myb family transcription factor 298 356 - -
Lapu6g01015 488 MobiDBLite consensus disorder prediction 1 128 - -
Lapu6g01015 488 Gene3D - 299 356 - -
Lapu6g01015 488 MobiDBLite consensus disorder prediction 355 448 - -
Lapu6g01015 488 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 485 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lapu6g01015 488 MobiDBLite consensus disorder prediction 8 66 - -
Lapu6g01015 488 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01015 Lapu-Chr6 10247881 10254268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01015 148 485 G2-like Transcription Factor Family AT5G16560 45.983 8.14e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu6g01015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01015 - - ccaj:109796302 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01015 6 10247881 10254268 Lapu6g01015 6 10247881 10254268 ECH
Lapu6g01015 6 10247881 10254268 Lapu6g01015 6 10247881 10254268 PCT