Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01003 ATGGGGCATTTTTCCTCGATGTTCAATGGGTTGGCACGGTCGTTTTCAATGAAGAAAGGAAGAAAGAATGAGAAATGTGGAGGGAGGGAAGCTGCTGAAGCAATGGCAAAGGAGGCTAAGAAGAATGAGATGATGCTGTGTAGCTCTGGCATAGTTCATGTCGATGGTTCAAGCAACTTTGCCTCCGTATTCTCCAAAAGAGGTCAGAAAGGAGTGAACCAAGATTGCTGCATAGTGTGGGAGGAATTTGGATGCCAAGAGGACATGATGTTCTGCGGGATTTTTGATGGGCATGGACCATGGGGTCACTTTGTGGCCAAAAGAGTAAGAGAGTCAATGCCATCGTCTTTGCTATGCAACTGGCAGGAGACACTAGCTCAAACTTCAGTTGATCCTGGTATTGATGTAGAGGAAGGGAAAAGGCAACTTTACCGATTCAACGTATGGAAGCACTCTTACTTGAAAACTTGTGCGGCCATTGATCAAGAACTGAAGCAGTACCGCAAGATAGACTCATTTTACAGCGGAACAACTGCCCTGTCAATTGTCAGACAGGGTGAACTCATTGTCATAGCAAATGTTGGTGATTCTCGTGCTGTGTTGGCTACAACATCAGATGATGGAAGTTTGGTAGCGGTTCAACTAACAGTTGATTTCAAGCCCAATTTACCTCAGGAGGCCGAGAGAATAATAGAGTGCCAGGGGCGTGTGTTCTGCCTGGAGGACGAGCCAGGGGTGCATAGGGTGTGGTTACCGGATGCAGAGTCTCCAGGACTAGCCATGTCCAGGGCCTTTGGTGACTACTGCATTAAAGGGCATGGCCTAATTTCAGTGCCTGAGGTGACACACAGAAATTTAAGTAGTAGAGACCAGTTTGTTGTGCTAGCCACTGATGGGGTTTGGGATGTAATCTCTAATAAAGAAGCAGTGGAAATTGTATCTTCAACAGCAGATAAAGCTAAGGCAGCTAAACGCTTGGTAGAGTGTGCGGAACATGCATGGAAACGCAAGAGACGGGGCATTGCCGTGGATGACATTTCAGCTATTTGTCTTTTCTTTCACTCTTCCCTTTCATCAGACCAAGTTACCCAGGTTGCCACATTCAAATAG 1110 0.464 MGHFSSMFNGLARSFSMKKGRKNEKCGGREAAEAMAKEAKKNEMMLCSSGIVHVDGSSNFASVFSKRGQKGVNQDCCIVWEEFGCQEDMMFCGIFDGHGPWGHFVAKRVRESMPSSLLCNWQETLAQTSVDPGIDVEEGKRQLYRFNVWKHSYLKTCAAIDQELKQYRKIDSFYSGTTALSIVRQGELIVIANVGDSRAVLATTSDDGSLVAVQLTVDFKPNLPQEAERIIECQGRVFCLEDEPGVHRVWLPDAESPGLAMSRAFGDYCIKGHGLISVPEVTHRNLSSRDQFVVLATDGVWDVISNKEAVEIVSSTADKAKAAKRLVECAEHAWKRKRRGIAVDDISAICLFFHSSLSSDQVTQVATFK* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01003 369 CDD PP2Cc 59 353 IPR001932 -
Lapu6g01003 369 SMART PP2C_4 53 351 IPR001932 -
Lapu6g01003 369 SUPERFAMILY PP2C-like 57 354 IPR036457 -
Lapu6g01003 369 PANTHER PROTEIN PHOSPHATASE 40 351 IPR015655 GO:0004722|GO:0006470
Lapu6g01003 369 Gene3D - 53 356 IPR036457 -
Lapu6g01003 369 FunFam Probable protein phosphatase 2C 34 51 355 - -
Lapu6g01003 369 Pfam Protein phosphatase 2C 76 329 IPR001932 -
Lapu6g01003 369 ProSiteProfiles PPM-type phosphatase domain profile. 60 353 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01003 Lapu-Chr6 10143153 10146428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g01003 1 354 PP2C-type Phosphatase Gene Family AT3G05640 72.472 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01003 - - vra:106757085 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01003 6 10143153 10146428 Lapu6g01003 6 10143153 10146428 ECH
Lapu6g01003 6 10143153 10146428 Lapu7g00406 7 4774511 4777783 PCT