Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00996 ATGATGGATCTCAAGGAATGGTCGTCTTCAGAGCTCAACGACAACAAGAAATGCTGCGCTGATTGCAAAACCACCAAGACCCCACTCTGGAGAGGAGGACCAGCTGGACCCAAGACGCTGTGCAACGCTTGTGGAATCAGGTACCGGAAGAGAGGGAGTTGTTCGAGGAAGAGAGAGGAGGTGGTGGTGTTGCACCGGACATCCTCTGTTGTGAAGAAACAGAGGTGGAAGATGTTGGGAGAAGAGGAACAGGCGGCTGTTTGTTTGATGGCCTTGTCCTGTGGTTTTTTTACCATTCCTTCACTTTCCACATTCCAGGTAACCTAA 327 0.5046 MMDLKEWSSSELNDNKKCCADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRGSCSRKREEVVVLHRTSSVVKKQRWKMLGEEEQAAVCLMALSCGFFTIPSLSTFQVT* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00996 108 Gene3D - 14 82 IPR013088 GO:0006355|GO:0008270
Lapu6g00996 108 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 53 - -
Lapu6g00996 108 ProSiteProfiles GATA-type zinc finger domain profile. 13 52 IPR000679 GO:0006355|GO:0043565
Lapu6g00996 108 SMART GATA_3 13 64 IPR000679 GO:0006355|GO:0043565
Lapu6g00996 108 CDD ZnF_GATA 19 54 IPR000679 GO:0006355|GO:0043565
Lapu6g00996 108 ProSitePatterns GATA-type zinc finger domain. 19 44 IPR000679 GO:0006355|GO:0043565
Lapu6g00996 108 Pfam GATA zinc finger 19 53 IPR000679 GO:0006355|GO:0043565
Lapu6g00996 108 PANTHER OS01G0976800 PROTEIN 8 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00996 Lapu-Chr6 10094126 10095470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00996 3 95 C2C2-Gata Transcription Factor Family AT5G49300 51.304 2.18e-29 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu6g00996 GATA 4.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00996 - - vra:106757446 212.616