Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00995 ATGTCGTATCGGCCGAATGCGAACTCTAGGACCGAGGTTCGTCGGAACCGTTACAAAGTCGCCGTGGACGCCGATGAAGGTCGGCGACGCCGAGAGGATACGATGGTGGAGATTCGAAAGAACCGTAGGGAGGAGAGTTTGCAGAAGAAGAGACGCGAGGGTCTCCAATCTCAGCAGATTCCTGCGTCAGCTCACTCTACTCTAATAGAGAAGAAGTTGGAACACCTACCGGCCATGGTTGCAGGTGTTTGGACCAATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGATGCTTTCAATTGAACGTCGCCCACCCATTGAGGAGGTTATTCAAGCTGGTGTAGTTCCACGCTTTGTTGAGTTTTTGATGAGGGAAGATTTTCCAATGCTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGGACATCTGAAAACACTAAGGTGGTAATTGATCATGGTGCTGTCCCAATTTTTATAAAGCTCCTTGGTTCTCCCAGTGATGATGTCCGTGAACAGGCTGTTTGGGCATTAGGAAATGTTGCTGGAGATTCTCCTAGATGCCGTGATCTTGTTCTTGATAATGGAGCTTTGCTTCCTCTGTTGGCACAATTGAATGAGCATGCCAAGCTTTCTATGCTAAGAAATGCTACCTGGTCACTCTCGAATTTCTGCAGGGGAAAACCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCCAATCTTATCCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGACGGTACAAATGACAAAATTCAGGGTGTAATTGAAGCTGGTGTTTGTAGCAGGCTTGTTGAGCTTCTAACGCATGATTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACTATTGGAAATATTGTCACTGGAGATGATTTGCAGACGCAGGTCATCATCAACCATCATGTACTTCCACGTCTTTTGAATCTCTTGACTAATAATTATAAAAAAAACATCAAGAAGGAAGCATGCTGGACAATATCAAACATCACAGCTGGGAACAAACGGCAGATTCAGGATGTAATTGAGGCTAATCTAATTGCTCCTCTAGTCCATCTACTTCAAAATGCCGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCTGGTGGATCTCATGAACAAATCAAGTTCCTTGTAAATCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACAGTTTGTTTGGAAGGTCTTGAAAACATCTTGAAGGTAGGAGAAGCTCAGAAAAATGTCAGCAATACTGATGGTGTGAATCTATATGGCCAAATGATTGATGATGCTGAGGGGTTAGAGAAAATTGAGAACCTCCAGAGTCATGATAACACTGAGATTTATGAAAAGGCAGTGAAGATTCTCGAGACATACTGGACGGAGGAAGATGATGAAACTGTGCCTCCAGGAGATGCTTCTCAGTCAGGGTTCAACTTTGGTGGCCACGAATTTCCTTCAGTGCCTTCTGGTGGATTCAACTTTAAGCGTTTTGGCTAG 1608 0.4428 MSYRPNANSRTEVRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQSQQIPASAHSTLIEKKLEHLPAMVAGVWTNDNNMQFEATTQFRKMLSIERRPPIEEVIQAGVVPRFVEFLMREDFPMLQFEAAWALTNIASGTSENTKVVIDHGAVPIFIKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLDNGALLPLLAQLNEHAKLSMLRNATWSLSNFCRGKPQPPFDQVKPALPALANLIHSNDEEVLTDACWALSYLSDGTNDKIQGVIEAGVCSRLVELLTHDSPSVLIPALRTIGNIVTGDDLQTQVIINHHVLPRLLNLLTNNYKKNIKKEACWTISNITAGNKRQIQDVIEANLIAPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVNQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAQKNVSNTDGVNLYGQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWTEEDDETVPPGDASQSGFNFGGHEFPSVPSGGFNFKRFG* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00995 535 FunFam Importin subunit alpha 13 52 - -
Lapu6g00995 535 MobiDBLite consensus disorder prediction 41 62 - -
Lapu6g00995 535 Gene3D - 13 52 IPR036975 GO:0006606
Lapu6g00995 535 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Lapu6g00995 535 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lapu6g00995 535 SUPERFAMILY ARM repeat 14 501 IPR016024 -
Lapu6g00995 535 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Lapu6g00995 535 Pfam Atypical Arm repeat 458 503 IPR032413 -
Lapu6g00995 535 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Lapu6g00995 535 Gene3D - 74 497 IPR011989 -
Lapu6g00995 535 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Lapu6g00995 535 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Lapu6g00995 535 PANTHER IMPORTIN ALPHA 14 501 - -
Lapu6g00995 535 Pfam Armadillo/beta-catenin-like repeat 108 147 IPR000225 GO:0005515
Lapu6g00995 535 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Lapu6g00995 535 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Lapu6g00995 535 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Lapu6g00995 535 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Lapu6g00995 535 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Lapu6g00995 535 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Lapu6g00995 535 Pfam Armadillo/beta-catenin-like repeat 278 314 IPR000225 GO:0005515
Lapu6g00995 535 FunFam Importin subunit alpha 74 497 - -
Lapu6g00995 535 SMART arm_5 275 315 IPR000225 GO:0005515
Lapu6g00995 535 SMART arm_5 360 400 IPR000225 GO:0005515
Lapu6g00995 535 SMART arm_5 317 358 IPR000225 GO:0005515
Lapu6g00995 535 SMART arm_5 149 189 IPR000225 GO:0005515
Lapu6g00995 535 SMART arm_5 403 443 IPR000225 GO:0005515
Lapu6g00995 535 SMART arm_5 234 273 IPR000225 GO:0005515
Lapu6g00995 535 SMART arm_5 106 147 IPR000225 GO:0005515
Lapu6g00995 535 SMART arm_5 190 232 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00995 Lapu-Chr6 10083571 10090967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00995 138 391 U-box Gene Family AT1G71020 20.392 5.39e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00995 K15042 - gmx:100798125 979.933