Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00981 ATGGAAGCAGTGTACATGTTGAAACCTCTTTTGCCTTGTCTGGAGGATGTGGTTAGAGTTGGGAACGACAGCGTTACTACTACTTCTGATATGCGTCTAGGAACAACAGCTAATTGTTACCTGCAGCTAGAAGCACCTGAACCGAATGTAACCGAGTCAGATATGACGGATCGGATGATCAAGATCCAGATCGCCAATCACCCTCTTTATCCAGATTTACTCTCTGCATACATCGAATGCCAAAAGGTTGGAGCGCCGCCAGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGTATGAATGCTCGCCGTGAGAAAGGGGACGGTCCTGAACTTGACCAGTTCATGGAAACGTACTGCGAAGTGCTTCATAGATACAAGGAGGAGTTGTCGAGGCCCTTCAATGAAGCGACCTTGTTTTTGGGAAACATGGAATCGCAACTAAGCAACCTTTGTAATGGAACACTAACAAAGTCATCTGATAACAACCGCTCCGATGAAGTAGCTAGTGGGGCATCAGAGGAAGAATTAAGTTGTGGGGAGATGGAAGAAGTTGAAGGACATGTATCTTCTTCTTTAACTTGCTCAGGTGATCAAAGCCTTAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGTGGTTTGAGAAAGGAATTTCTGAAACGGAGAAAGAAGGGGAAGCTACCAAAGGATGCAAAGATGGCACTCATGGACTGGTGGAACACCCATCATCGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGCTATCAGAAGTGACTGGACTGGATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGGAAACGGCATTGGAAACCAACTGAGGACATGCGATTTGCCGTTATGGAAGGGTTAAGTGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCATAGGAGGAGCTATGTTCTTTTAG 951 0.47 MEAVYMLKPLLPCLEDVVRVGNDSVTTTSDMRLGTTANCYLQLEAPEPNVTESDMTDRMIKIQIANHPLYPDLLSAYIECQKVGAPPELACLLEEIGRESHRMNARREKGDGPELDQFMETYCEVLHRYKEELSRPFNEATLFLGNMESQLSNLCNGTLTKSSDNNRSDEVASGASEEELSCGEMEEVEGHVSSSLTCSGDQSLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDAKMALMDWWNTHHRWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRHWKPTEDMRFAVMEGLSGGGGGGGGGGIGGAMFF* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00981 316 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 293 - -
Lapu6g00981 316 Pfam KNOX2 domain 110 155 IPR005541 GO:0003677|GO:0005634
Lapu6g00981 316 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Lapu6g00981 316 Gene3D - 221 294 - -
Lapu6g00981 316 MobiDBLite consensus disorder prediction 158 182 - -
Lapu6g00981 316 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Lapu6g00981 316 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Lapu6g00981 316 ProSitePatterns 'Homeobox' domain signature. 261 284 IPR017970 GO:0000981|GO:0006355
Lapu6g00981 316 CDD homeodomain 226 286 IPR001356 GO:0003677
Lapu6g00981 316 SUPERFAMILY Homeodomain-like 225 295 IPR009057 -
Lapu6g00981 316 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Lapu6g00981 316 SMART ELK_2 203 224 IPR005539 GO:0003677
Lapu6g00981 316 SMART HOX_1 225 290 IPR001356 GO:0003677
Lapu6g00981 316 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Lapu6g00981 316 Pfam ELK domain 204 224 IPR005539 GO:0003677
Lapu6g00981 316 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00981 Lapu-Chr6 9974239 9979207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00981 45 301 Homeobox Transcription Factor Family AT1G23380 53.612 4.68e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lapu6g00981 KNOX2 6.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00981 - - gmx:100814830 520.776