Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00976 ATGTCTCTGCGACCTGGTTCGGGTTCTGGTTCTCCTTCGAAGGCGAGGAAGAAAAGGTACAAGACTGGGGTTAACGCGGAATACAGTCGGAGACGGAGGGAAGAAGACCTCGTCGGCATCAGAAAAATCAAACGCCAGACCACTCTTCTCAAGAAACGAGAAGAGACACATTCCTGCGATACGCTGTTGGAAGCTATTCCTGAGATAGTACAACGTCTTTGTGCTGAGTACCCTCACAAGAAATTGGAGGCAACTGCTCACTTAAGGATTATGTTAACTCTTGGTAGTGCATTCACTCATTGGGAGCGTCTGAGTTCAGATCAGGTCCCTCCAATTGATGAGGTCGTTAAGAATGGTATTCTCCCTCTCTTTGTGGAGTTATTGTCAAGGGACGATGCACCCCAATTGCAGATAGAAGCTCTGTGGATTCTATCCCATTTTGCTTCCGGAACACCCCAACACAAAAGTCTTGTCGTTGAACTTGGTATTGTTCCTCATTTGGTCAATCTTCTCTCTAGCACCGATGATGATACCAGAGAAGAGGCAGTATGTCTTTTAGGAAACATTGTTGCTGATTCCCCAGACTACAGGGATCTTGCTCTTAACCATGGTGCTTTCATGCCATTATTATATCAGTTGCAACCACATTCAACATTGTATATGTTGAGACTTGCTACGTGGTGTTTATCTGTTTTGCTCCGTGGAGTGCCTCCAGTAAATTTTGAACAGGTAAAGCTTGCCTTACCTGCTCTTCAGCGACTCGTCCACGCGACGGATGAAGAAGTTGTAACAGATGCATGCTGGGCTCTGGCTTACCTTTCGGAAGGTCAAATTGACAAAAGTCAAGCTATTATTGAATTAGGAGTTTGCCCACAACTTGTGCAACTTCTTCAGCATCCATCAGATAAAGTTATTCTACCTGCGCTTCAGGCTTTAGGAAATATTGCTGCTGGTGATGAAGCTCAGACACAGGCTGTGATTGATGCCAATATTATTCCTCTTATTGTTGAAATTCTCCATAATGCTGAGTTTGAGGTCAAGAGGGAGGCTACCTGGGCGATCTACAATGTCACTTGTAAAGGATCTCTTGACAATATCAGGTCCCTTGCGGCTCAGGGTGGCATTGAGGCACTGTGTGAAGTGTTGAGCTGTCCAGAGCCAATGATTGTGACAATTTGTCTGGAGGGGCTGGTGAAGATTTTGGGAGTTGGAGAAGCTGACAAGGATGAAAAAGGCAACATTTTTGCTAGAAGGGTTGAGGAATGTGGAGGATTGGACAAGATTGAAACATTGCAGATTCACGACAACAATGAGATTCATACAAGAGCTTTGTGGATTTTGGATAGCTTTCGGGCAGAGAATGAGTTGGAAGAAACCAATATGCCCTCCAGCCTCCTTGATTTTTCACTCTCATGA 1416 0.4492 MSLRPGSGSGSPSKARKKRYKTGVNAEYSRRRREEDLVGIRKIKRQTTLLKKREETHSCDTLLEAIPEIVQRLCAEYPHKKLEATAHLRIMLTLGSAFTHWERLSSDQVPPIDEVVKNGILPLFVELLSRDDAPQLQIEALWILSHFASGTPQHKSLVVELGIVPHLVNLLSSTDDDTREEAVCLLGNIVADSPDYRDLALNHGAFMPLLYQLQPHSTLYMLRLATWCLSVLLRGVPPVNFEQVKLALPALQRLVHATDEEVVTDACWALAYLSEGQIDKSQAIIELGVCPQLVQLLQHPSDKVILPALQALGNIAAGDEAQTQAVIDANIIPLIVEILHNAEFEVKREATWAIYNVTCKGSLDNIRSLAAQGGIEALCEVLSCPEPMIVTICLEGLVKILGVGEADKDEKGNIFARRVEECGGLDKIETLQIHDNNEIHTRALWILDSFRAENELEETNMPSSLLDFSLS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00976 471 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 288 330 IPR000225 GO:0005515
Lapu6g00976 471 MobiDBLite consensus disorder prediction 1 27 - -
Lapu6g00976 471 Pfam Atypical Arm repeat 413 462 IPR032413 -
Lapu6g00976 471 Gene3D - 64 450 IPR011989 -
Lapu6g00976 471 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 204 IPR000225 GO:0005515
Lapu6g00976 471 PIRSF Importin_alpha 8 330 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lapu6g00976 471 PIRSF Importin_alpha 314 466 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lapu6g00976 471 SMART arm_5 276 317 IPR000225 GO:0005515
Lapu6g00976 471 SMART arm_5 362 402 IPR000225 GO:0005515
Lapu6g00976 471 SMART arm_5 193 234 IPR000225 GO:0005515
Lapu6g00976 471 SMART arm_5 107 149 IPR000225 GO:0005515
Lapu6g00976 471 SMART arm_5 151 191 IPR000225 GO:0005515
Lapu6g00976 471 SMART arm_5 319 359 IPR000225 GO:0005515
Lapu6g00976 471 SMART arm_5 237 275 IPR000225 GO:0005515
Lapu6g00976 471 Pfam Armadillo/beta-catenin-like repeat 152 190 IPR000225 GO:0005515
Lapu6g00976 471 Pfam Armadillo/beta-catenin-like repeat 282 317 IPR000225 GO:0005515
Lapu6g00976 471 Pfam Armadillo/beta-catenin-like repeat 110 148 IPR000225 GO:0005515
Lapu6g00976 471 Pfam Armadillo/beta-catenin-like repeat 320 357 IPR000225 GO:0005515
Lapu6g00976 471 Pfam Importin beta binding domain 16 85 IPR002652 GO:0006606|GO:0061608
Lapu6g00976 471 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 119 162 IPR000225 GO:0005515
Lapu6g00976 471 Gene3D - 14 54 IPR036975 GO:0006606
Lapu6g00976 471 SUPERFAMILY ARM repeat 15 450 IPR016024 -
Lapu6g00976 471 ProSiteProfiles IBB domain profile. 1 62 IPR002652 GO:0006606|GO:0061608
Lapu6g00976 471 PANTHER IMPORTIN ALPHA 16 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00976 Lapu-Chr6 9902794 9906064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00976 151 381 U-box Gene Family AT1G23030 24.896 8.46e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00976 K15042 - gmx:100793195 494.582