Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00955 ATGGGCGGAGATGGAGCCACGGCAAACGCCGAGGTGCAGTATGCCTCGGCGAAGATTTCTGTGTGGTGGGACATTGAAAACTGCCATGTGCCCAAGGGTTCGGATCCACACGCGATTGCGCAGAACATAAGCTCTGCGCTTGTCCGCATGAACTACTGTGGCCCCGTCTCCATCTCCGCCTACGGAGACACCACGCGCATCCCAGCCTCTGTACAGCACGCGCTCTCCAGCACCGGAATTTCCCTCAACCACGTCCCTGCCGGTGTGAAAGACGCAAGTGACAAGAAGATTCTTGTTGATATGCTATTCTGGGCAGTGGACAATCCCGCACCCGCTAATTATTTATTAATTTCGGGTGACCGAGACTTCTCAAATGCTCTCCATCAACTTCGAATGAGGAGATATAATATTCTTCTTGCGCAACCTCAGAAGGCATCAGCACCCTTGGTCGCTGCTGCCAAGAGTGTATGGCTTTGGACTAGCCTCTTAGCTGGAGGACCTCCACTGTCTAATGGTGAATCACACCAACTTGGTAATAGTAGCCTTAGCCATGTGTCATCTTCTGACTCCTTACAAATTCCAGTTACAAGTTCTGCTCAGATGCAGCAACAGGTGGAATCCTATTCAGAAGTTCATGTAGGAAATTCAAAATTGCCAAATGGAGGTAGGGGATTCGACTCTAGGTTTCAAGGTAAACCTAATTGGAGAAACCCGGGTCAATCAAATGCACCCAGAGCCATGAATCCACCACCACCTGGCCTTCAAGATACTCGTAATCGTAATAATATAAACTCTTATCGACCAGGCAACTTTAATCCAAATGTTCCGCTGAGTGGATCTGCTACAAATTATGTTCATGGCAATACTGATCAGTCATGGAGCAATAACAGTAATCTACAGGGCAATCATCAAGTTCCTTATTCCCAGCCATTAAGACCAAACAACTTCCCATTGCAACCTCCTTTTGCACCTAGTAATTCTTATTCTCCAAATTCCCATACTTTTGCAACTCCGATGGTGCCACCTAGGACTGGTGGTCCCAATTTCAACCCAGGGCCACATACCAATGTGCCAGATATTGGTAATCTGAACATTTCAGGATATCCTAATACTGTTCATAACCCTCCTACTATTCAACAACGGAATGGAGAGTTGAAACATAATCCTAATAATGGTCCTCCACATCTTTTAAGATCAATCGATGAAAAAAATGGACATGTGGTACATAACAGTGGCGCGCAACAATTACACCAAGGTTATCAACAAGGTCCAGAATATCAACCAACGCCGTTGGCAGCAATGGGTAATAATAAGCCTCCTGGTGGTGGTATGTGGGGTTCTCCTGGATGTCCTAAGCCTTCTGAATATGTACAAGGCCTAATAGGGGTTGTTTTACTTGCCTTGAACTCACTAAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCGGTTTGGAGATCCCAAGCACCGCAACACTGATGTTAAGAAGGCTCTTGAAAGTGCTATTGAGCAGAATATGGTCGTGAAACAGAATTTAGGTGCTTTGCCATTGTATGTTGGTAAGAATGATAAACTTTGGAAGTGCGTTAATCCTTTAGGGGGTAATCCTAAGCAGCACTCAAAAGAAACATGGGATCAAATTGAAAATTTTTTAACAACTCCTGCTGGAAGATCAGCAATAATGGCTACACTGTGCAAGTATGAAGCAGGTATTGTGATTAAGAATATGTGCTTCAAAGATCTTGCTTTGGGTGATGTCCTTCAGATATTGAACATGTTAATTACCCATAAAAAATGGATTGCACATCATCCGTCTGGTTGGCAACCTCTTAACATTGCTCTTCCTGAGACAAACCCTGGTTCAGGGGTTGTAGCTGGAGCATAA 1899 0.4466 MGGDGATANAEVQYASAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESHQLGNSSLSHVSSSDSLQIPVTSSAQMQQQVESYSEVHVGNSKLPNGGRGFDSRFQGKPNWRNPGQSNAPRAMNPPPPGLQDTRNRNNINSYRPGNFNPNVPLSGSATNYVHGNTDQSWSNNSNLQGNHQVPYSQPLRPNNFPLQPPFAPSNSYSPNSHTFATPMVPPRTGGPNFNPGPHTNVPDIGNLNISGYPNTVHNPPTIQQRNGELKHNPNNGPPHLLRSIDEKNGHVVHNSGAQQLHQGYQQGPEYQPTPLAAMGNNKPPGGGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRFGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGNPKQHSKETWDQIENFLTTPAGRSAIMATLCKYEAGIVIKNMCFKDLALGDVLQILNMLITHKKWIAHHPSGWQPLNIALPETNPGSGVVAGA* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00955 632 CDD PIN_limkain_b1_N_like 18 142 - -
Lapu6g00955 632 MobiDBLite consensus disorder prediction 173 214 - -
Lapu6g00955 632 Gene3D - 9 161 - -
Lapu6g00955 632 Pfam NYN domain 18 154 IPR021139 GO:0004540
Lapu6g00955 632 MobiDBLite consensus disorder prediction 173 272 - -
Lapu6g00955 632 MobiDBLite consensus disorder prediction 254 272 - -
Lapu6g00955 632 Pfam OST-HTH Associated domain 570 617 IPR025677 -
Lapu6g00955 632 PANTHER LIMKAIN B LKAP 13 512 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00955 Lapu-Chr6 9735671 9740644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00955 8 200 C2H2 Transcription Factor Family AT5G61190 69.948 8.61e-85 285
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00955 6 9735671 9740644 Lapu6g00955 6 9735671 9740644 ECH