Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00948 ATGCCTCTGCATGAGTTTTACCAAGTGAGTAAAGGGAAACTTGATCAGAAAGAGATGAACAGCAACACTTGTGCAGCAGATCAATCTTCTGCACCCAACAATGATTTGTTTGAGCTGGTTTGGGAAAAGGGCCAGATTTCAGTGCAGGGTCAATCCAGTAGAGCTAGAAAGAGCCCAAATTGTAAAACTCTGCCTTCTCATTGCTTACCATCTCAGACTCCACTGGGAGGATATGCTAATGATAATAATGCTACCATCACAAGGATGGGGAGGTGTGGGAATTTAGGAGTTGAATTGAATGAAATTAAAAGGCTGTTCCCTTCAGGTGAAGGGTATTTTAGTGAAGAAGAAGAAGAAGACACGGTGATGCCTTGGTTGAATTGTGGAATGGATGACTCTTTGCAACATGGATATAGTTCTGATTTTTTCCATGAACTATCAGGGGTCACCATGAATGAGCCATCAGCATCAAATAGTTTTTCTTTGTTAGATAGAAGAAATAGTTGTAGTAAGGTATTTAGGGACACTCATAAAAACGCTCCATTTGCATCTGTTAGATCCAAGGCAGCAGATATAGCTGAAAATAATACAAATAATGTTCCATCTCCCTCAAGTGGTTTTCCTAGCCTGAAGATGGAGAAGCAAGGTCCAGTTGTGAGTAGCAATATTTCCACCATGATGAATTTTTCCCATTTTGCGAAGCCTGCTGCTATTGTCAAAGCTAACCTTCAGAACATTGGCTTGACATCAAGATCAGGAAGTGTGGGATTAAAGATAAAAGGTGCTGCTGCAACTGTAAGTGTAACCAATCCGGCTGAATCAACAAAAGTTGAATTAAGTGGAGAGTGTCCAAAGAAAGCAGTCATACAAAGTCATCAGGTTTCGGAGCCAAAAACTCTTGAGCATGATGGTGCCGTTTCTACAAAATGTGACCCTTCTTGCAAAGATGTGTCCAGGATTGACGAAACTTCAAATCTAATCGTTGGAGAAAGTGGGAATAAAGGAAAGGAAGCTGTTGAAAAAAATGTGGAGGCAGCTGTAGTTTCCTCCTCTGTTTGCTCTGGTAATGGTGCAGAAAGGGGTTTGGTGGATCCAAATCAAAATTTGAAGACAAAAAGTACAGACACAGAGGACTTTGAGAGCCAAAGTGAAGATGTTGAGGAAGAATCAGTTGGTGTTAAAAAGGAGGTTCCTGCACGAGGAAGAGCCAAGAGAAGCCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGAAGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTAATACCAAATTGCAATAAGGCTGATAAAGCTTCGATGTTGGATGAGGCAATAGAGTATCTCAAAACACTTCAACTCCAACTTCAAATAATGTCAATGGGAACTGGTTTATACATGCCTGCAATGATGTTACCACCGGGAATACAACACATGCATGCACCACATATGGGTCCTTTTTCTCCTATAGGTGTTGGCATGCAAATGAGGTTAGGAGTGGGTTGTGGCATGGGCATGCTTGATGGCAATGATGAGTCTTGTAGATTTCCAATGGTTCAAGTGCCCCAAATGCAAGGAACTAAACTTCCCATTGCACATGCACCTGGTTCCACTGTTTTACAAGGGATGGCAAATACTCAAGGGTTTGGGCTTCTTAGTCAGGGTCACCCCATGCCAATGCCACATGCTCCCATATTTTCATTTCCTGGAGAATCTTTTATGAAACCATCAACTTTAGGACTAAATTCCTATGGAACAGGACTTAAGGAAAATGTTGATTCGGTTTCAGCCTCTAACTTAAAGGATCCAATGCCACATGTGAACTCACAAGATGCTCAAAACACCAACGCTTGTAACCCAACAAATCAGATGCCAACACAGCGTGAAGCAACAATTGGTGGATTTGAACACTCAACTTTGGTACGTAACAGTGGTCATGCCACTTCGGCAAATGACAGAAGAGCTACTAATCCACAGGAAAAAGGATAA 2001 0.4173 MPLHEFYQVSKGKLDQKEMNSNTCAADQSSAPNNDLFELVWEKGQISVQGQSSRARKSPNCKTLPSHCLPSQTPLGGYANDNNATITRMGRCGNLGVELNEIKRLFPSGEGYFSEEEEEDTVMPWLNCGMDDSLQHGYSSDFFHELSGVTMNEPSASNSFSLLDRRNSCSKVFRDTHKNAPFASVRSKAADIAENNTNNVPSPSSGFPSLKMEKQGPVVSSNISTMMNFSHFAKPAAIVKANLQNIGLTSRSGSVGLKIKGAAATVSVTNPAESTKVELSGECPKKAVIQSHQVSEPKTLEHDGAVSTKCDPSCKDVSRIDETSNLIVGESGNKGKEAVEKNVEAAVVSSSVCSGNGAERGLVDPNQNLKTKSTDTEDFESQSEDVEEESVGVKKEVPARGRAKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKTLQLQLQIMSMGTGLYMPAMMLPPGIQHMHAPHMGPFSPIGVGMQMRLGVGCGMGMLDGNDESCRFPMVQVPQMQGTKLPIAHAPGSTVLQGMANTQGFGLLSQGHPMPMPHAPIFSFPGESFMKPSTLGLNSYGTGLKENVDSVSASNLKDPMPHVNSQDAQNTNACNPTNQMPTQREATIGGFEHSTLVRNSGHATSANDRRATNPQEKG* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00948 666 CDD bHLH_AtPIF_like 407 469 IPR047265 -
Lapu6g00948 666 FunFam Basic helix-loop-helix transcription factor 402 465 - -
Lapu6g00948 666 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 405 468 IPR036638 GO:0046983
Lapu6g00948 666 MobiDBLite consensus disorder prediction 355 418 - -
Lapu6g00948 666 MobiDBLite consensus disorder prediction 387 418 - -
Lapu6g00948 666 Pfam Helix-loop-helix DNA-binding domain 411 457 IPR011598 GO:0046983
Lapu6g00948 666 SMART finulus 413 462 IPR011598 GO:0046983
Lapu6g00948 666 MobiDBLite consensus disorder prediction 642 666 - -
Lapu6g00948 666 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 407 456 IPR011598 GO:0046983
Lapu6g00948 666 Gene3D - 402 464 IPR036638 GO:0046983
Lapu6g00948 666 MobiDBLite consensus disorder prediction 642 659 - -
Lapu6g00948 666 PANTHER TRANSCRIPTION FACTOR PIF3 1 628 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00948 Lapu-Chr6 9667817 9672290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00948 1 482 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.747 2.12e-66 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g00948 HLH 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00948 K12126 - gmx:102659557 851.277