Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00947 ATGGGGAGACACTCTTGCTGCTACAAACAGAAGCTTCGTAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCAGTTCCAAAACTTGCTGGCCTTCAGAGATGTGGCAAGAGCTGCAGATTAAGGTGGATAAATTACCTTAGGCCAGATTTGAAGAGGGGGGCATTCTCACAGCAAGAAGAGAACTCCATAATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCGCAGATTGCGGCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAATCTATGGAATTCCTGTCTGAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACACACCAACCCCTCTCTGAGGTTGAGAATGACAAGGACAAGCCTCTTACAGCTGACAGAAGCAACCAGAAAGCCTCCAATGAGGTGAGTGTTGTTGAGCCACCAAAACAAAAGCCAATAACTACTACTACTTCCATGCCTATGGATAGATATCCCCTTGAAGTTTCTGCTACCCCAAAGATCAGCAGTGGCAACAACAACAGCAGCACCCTAGAAAGGTTTGGCACTTGTCATGACAACAACAGCTCCATCGCTAGTTCTGATATGATGGGAATGGGATATTTCCCTTTCCAGCACCTGAACTATGGACCAAACATGGGACTCACTACTGCCAACCCCAACAACACCCCACTTTGTTTCATTCCTGGTTCCACTTCTTCCCAAATGATGTCAGAGCTGAATTCCACCATGCTCCATTCTGTGTTCTCAACACATGTAAAGCCCACTGTCAGCCTACAGTCTAATAACAACAACCCTTCTTCCATATCCTCTGACGGGGTTCAGAACTGGCAAGGAGGTACCTTCAGTAATAACAACAACAACAATGCAAGCAAAAGCAATGGGAGCAGTAGCTGCAGCATCCAATTACAAAGCAGCACTCCCTTCCTTGATCATAGCAGCACAATAACATGGGGGCTGCAGGCAGAATCTGCCACCAAGACAGATAATAAAGACGTTCATTCTTCTCATGTGGTACCCTTGCAATCAGAACAAGAAGACATCAAATGGTCTGAGTATCTGAACAACACCCCCTTTTTCCTGGGAACCACAGTGCAGCAGCATCAGACCACTCACTCTCTCTACAGTGATGAGGTGAAGCCAGAAACAGCCTTCATAGCAGACGAATCAAGTACCAGCTGGCACCACAGCCAGCATTTTCAACCCTCGGATATATATAGCAAAGATCTTCAGAGATTTTCAGTGGCTTTTGGACAAACCCTGTAG 1317 0.4609 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEVENDKDKPLTADRSNQKASNEVSVVEPPKQKPITTTTSMPMDRYPLEVSATPKISSGNNNSSTLERFGTCHDNNSSIASSDMMGMGYFPFQHLNYGPNMGLTTANPNNTPLCFIPGSTSSQMMSELNSTMLHSVFSTHVKPTVSLQSNNNNPSSISSDGVQNWQGGTFSNNNNNNASKSNGSSSCSIQLQSSTPFLDHSSTITWGLQAESATKTDNKDVHSSHVVPLQSEQEDIKWSEYLNNTPFFLGTTVQQHQTTHSLYSDEVKPETAFIADESSTSWHHSQHFQPSDIYSKDLQRFSVAFGQTL* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00947 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lapu6g00947 438 SMART sant 66 114 IPR001005 -
Lapu6g00947 438 SMART sant 13 63 IPR001005 -
Lapu6g00947 438 FunFam MYB transcription factor 68 140 - -
Lapu6g00947 438 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lapu6g00947 438 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu6g00947 438 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lapu6g00947 438 MobiDBLite consensus disorder prediction 129 143 - -
Lapu6g00947 438 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu6g00947 438 CDD SANT 17 61 IPR001005 -
Lapu6g00947 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lapu6g00947 438 FunFam Myb transcription factor 11 67 - -
Lapu6g00947 438 MobiDBLite consensus disorder prediction 274 316 - -
Lapu6g00947 438 MobiDBLite consensus disorder prediction 144 170 - -
Lapu6g00947 438 PANTHER MYB DOMAIN PROTEIN 55 1 338 - -
Lapu6g00947 438 MobiDBLite consensus disorder prediction 119 170 - -
Lapu6g00947 438 Gene3D - 68 142 - -
Lapu6g00947 438 CDD SANT 69 109 IPR001005 -
Lapu6g00947 438 Gene3D - 11 67 - -
Lapu6g00947 438 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00947 Lapu-Chr6 9655361 9657597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00947 1 438 MYB Transcription Factor Family AT1G09540 47.241 5.54e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu6g00947 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00947 K09422 - gmx:100788976 726.857