Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00946 ATGGCAAGAGTTTTCTGGACCGCCATTGCCATAGTAGTTGTTTTCAGCGACTGGGTTGATGGGTTGGGAGGTTATTATGAACATCACTTCAATGAAACAGAGTTGTCTTTCTTAGAGGCTCATGAAGCTTCCTTATCCTATGCCGGAAGTAATCTTCTGCTGGTAGGACTCACCCTTGTCCAAAATGCTGCTGCTAAAGGAGCAGTTTGCTTGGATGGAACATTACCTGGTTATCATTTGCATCGAGGATATGGATCAGGTGCAAATAGCTGGCTTATTAATTTAGAGGGTGGTGGATGGTGTAATAATATTAGAACATGTGTTTATCGCAAGAAAACCCGGCGTGGATCATCAGATTTCATGGAAAAGGAGATACCTTTTACTGGAATATTGAGTAATAAGGCTGAAGAAAATCCAGATTTTTTCAATTGGAATAGAGTAAAGCTTCGCTATTGTGATGGTGCCTCATTTGCCGGGGACAGTGAGGATGAGACTGCAGAACTCCAATTCAGAGGACAGCGTATTTGGGCAGCTGCTATGGAAGATTTGATGTCAAAGGGAATGCGTTTTGCCGATCAGGCTCTTCTTTCGGGATGCTCCGCGGGTGGCCTGGCTACTATTATTCATTGTGATGAATTTCGTGGTCTCTTTCCAATGACCACCAGAGTGAAATGTCTAAGTGATGCTGGGTTGTTTCTTGATGCGATTGACGTATCTGGTGGACGTACCCTCAGGAATTTATACAGTGGTGTTGTTGGATTGCAGGGAGCGCAGAAGAATCTGCCACAGATTTGTACTAATCACCTTGATCCCATCTCGTGCTTCTTCCCTCAAAACTTGATTGCCAGTGTTAAGACCCCACTATTCATTCTTAATGCTGCTTATGATTCATGGCAGATCCAGTCCAGTTTAGCTCCTCCATCGGCAGATCCGCATGGCTATTGGCATGATTGTAGATTAAATCATGCTAAATGTACTGGACCACAAATCCAATATCTGCAAGGATTCAGGAATCACATGCTGAATGTTATTAAAGACTTCGCAAGATCAAACCAGAATGGCTTGTTTATTAATTCATGTTTTTCTCACTGCCAAACTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCTATATTGATCAATATGCAGGCAATTGCTCTGGCTGTTGGAGACTGGTATTTTGATCGAGCAGGTGTTAAGGCCATTGATTGTCCTTACCCTTGTGATAATACCTGCCACCATCTGATTTTCAGATGA 1260 0.4302 MARVFWTAIAIVVVFSDWVDGLGGYYEHHFNETELSFLEAHEASLSYAGSNLLLVGLTLVQNAAAKGAVCLDGTLPGYHLHRGYGSGANSWLINLEGGGWCNNIRTCVYRKKTRRGSSDFMEKEIPFTGILSNKAEENPDFFNWNRVKLRYCDGASFAGDSEDETAELQFRGQRIWAAAMEDLMSKGMRFADQALLSGCSAGGLATIIHCDEFRGLFPMTTRVKCLSDAGLFLDAIDVSGGRTLRNLYSGVVGLQGAQKNLPQICTNHLDPISCFFPQNLIASVKTPLFILNAAYDSWQIQSSLAPPSADPHGYWHDCRLNHAKCTGPQIQYLQGFRNHMLNVIKDFARSNQNGLFINSCFSHCQTERQDTWFADNSPILINMQAIALAVGDWYFDRAGVKAIDCPYPCDNTCHHLIFR* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00946 419 Pfam Pectinacetylesterase 53 398 IPR004963 GO:0016787
Lapu6g00946 419 PANTHER NOTUM-RELATED 38 415 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00946 Lapu-Chr6 9644565 9649115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00946 1 419 Carbohydrate Esterase AT1G57590 66.745 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00946 K19882 - gmx:100782401 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00946 6 9644565 9649115 Lapu7g00495 7 5594119 5599055 ECH
Lapu6g00946 6 9644565 9649115 Lapu6g00946 6 9644565 9649115 ECH
Lapu7g00495 7 5594119 5599055 Lapu6g00946 6 9644565 9649115 ECH
Lapu3g00420 3 4259124 4265087 Lapu6g00946 6 9644565 9649115 ECH
Lapu6g00946 6 9644565 9649115 Lapu7g00476 7 5446518 5451907 PCT