Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00943 ATGTCCTCCTCAAGGCCTAGCCCATCATCGAGCAATAATTCTGGAAGATCAAGATCATCAAGACGCAGTGCTAGGGTTCTTGCTCAGACAACTTTAGATGCAAAACTGCATGCAACTTTTGAGGAATCAGGTAGTTCTTTTGACTACTCCAATTCAGTGAGATTGTCTCCTGGCACAGGTACTGCCAGTGGTGATCATCAATCAAAGTCTGATGGAGTAACAACTGCTTACCTCCATCAGTTACAGAAAAGCAAGCTTATCCAACCATTTGGGTGCTTGCTGGCCTTAGATGAGAAAACATGTAAGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGCCATGCTGTCCCCAGTGTTGGTGACCACCCTGCTCTTGGCATTGGCACTGACATAAGAACAATTTTCACTGCCCCGAGTTCTACGTCTATTCAGAAGGCACTAGGATTTGGGGAGGTTTCACTTCTTAACCCCATTCTAGTTCATTGCAAGTCCTCTGGGAAGCCCTTTTATGCAATTATCCACCGTGTTACCGGTAGTGTGATAATTGATTTTGAGCCGGTTAAGCCTCATGAAGTTCCCATGACTGCCGCAGGTGCCCTGCAATCCTATAAGTTTGCAGCAAAAGCAATAACAAGATTGCAATCCTTGCCTGGTGGGAGCATGCAGACTCTGTGTGACACAATGGTTAGAGAGGTTTTTGAACTCACAGGTTATGATAGAGTGATGGCTTATAAATTTCATGAGGATGATCACGGGGAAGTGATTGCTGAAGTGAAAAGGCCAGGCCTAGAGCCATATCTGGGGTTGCACTACCCAGCAACTGATATTCCTCAGGCTACACGTTTTTTGTTTATGAAGAACAAGGTGCGCATGATAGTTGATTGTCGTGCAAAGCATGTGAAGGTGCTTCAAGACAAAAAAATTCCATTTGAATTAACTTTGTGTGGATCAACCTTGAGGGCTGCTCATAGTTGTCACTTGCAGTACATGGAAAACATGAATTCTAGTGCTTCCTTGGTTATGGCGGTTGTGGTCAATGACAATGATGAAGATGGGGATAGTTCTGATGCTGTTCAGCCACAGAAGAGAAAGAGACTATGGGGTTTAGTAGTTTGCCATCACTCCACTCCCAGGTTTGTTCCTTTCCCTCTCAGGTATGCTTGTGAATTCCTGGCTCAGGTATTTGCCATCCATGTGAACAAAGAACTAGAGATAGAGTATCAGATTGTTGAGAAGAATATCCTCAGGACTCAAACACTGTTGTGTGATATGCTGATGCGAGATGCACCCCTAGGTATTGTATCACAGAGTCCAAATATAATGGATCTTGTTAAGTGCGATGGTGCAGCACTGTTGTATAAAAACAAGGTATGGAGATTAGGGGTAACACCAAGTGAATCCCAGATAAGAGAGATAGCTTTGTGGCTCTCTGAATGTCACAGGGATTCCACAGGTTTGAGTACAGATAGTTTGTCTGATGCAGGCTTCCCAGGGGCTGCTACTCTTGGAGATATAGCTTGTGGAATGGCAGCTGTCAGAATATCTTCCAAAGATATAGTTTTCTGGTTTCGATCTCACACAGCCGCAGAAATTCGATGGGGTGGTGCAAAGCATGAGCCTGGTGAAAGGGACGATGGTAGGAGGATGCATCCAAGATCTTCATTCAAGGCTTTCCTTGAAGTTGTGAAGACACGGAGTTTGCCCTGGAAGGACTATGAAATGGATGTCATTCATTCGTTGCAGCTAATACTGAGAAATGCATTCAAAGACACAGAGAGTATGGAGATAAGCACATATGCTATCAATACAAGATTAGGTGATTTGAAAATTGAAGGGATGCAAGAACTGGAAGCAGTGACTAGTGAGATGGTAAGATTAATTGAAACAGCAACAGTGCCAATTTTGGCTGTTGATGTTAATGGGATGGTCAATGGATGGAATACAAAAATTGCTGAGTTGACATGTCTTCCAGTTGAGCAAGCTATTGGGAAGAATTTACTCACTCTTGTTGAAGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGGACATGGCACTGCAGGGTGAGGAAGAGAAAAATGTGCAATTTGAGATCAAAACACACGATTTGAAGATTGATTCTGGTCCTATCAGCTTGGTGGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACTGTGATGGACAAATTCACCCGAATTGAAGGCGACTACAAGGCAATTGTGCAGAACCCAAACCCATTGATCCCTCCAATATTTGGCACGGATGAATTTGGCTGGTGTAGCGAATGGAATTCAGCCATGACAAAATTATCTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTTGGGGAGGTTTTTGGGACACAAATAGCTTGTTGTCGTCTAAGGAATCAAGAAGCTATTGTTAACTTCAGCATTGTACTTAACAAATCCATGGCTGGTTTGGAAACGGAGAAGGTTCCTTTTAGCTTCTTTACTCGTGATGGGAAACACGTAGAATGTCTGCTTTCCGTGAGTAAGAAATTGGATGCAGAGGGTGTGGTAACTGGAGTCTTCTGCTTCTTGCAACTAGCTAGTCCAGAGCTGCAACAAGCATTACATATCCAGCACCTGTCTGAACAAACTGCATCCAAAAGACTGAAAGCTATAACTTATTTGAAAAGGCAAATTCAGAGTCCTTTATATGGGATTGAGTTCTCCCAAAAATTGTTAGAAGGTACTGAGTTGGGAGCTGAACAAAAACTATTTCTGCAAACGGGTACTCGGTGTCAACGCCAGCTTAGCAAAATCCTGGATGACTCAGATCTTGACAGCATCATTGATGGCTACCTGGATTTGGAGATGGTTGAATTTACTCTGCATGAAGTGTTGGTTGCCTCCTTAAGTCAAGCCGTGTCAAAAGGTAATGCAAAAGGTATCCGAGTAGTCAATGATGTTGAAGAGAAGATCACAACAGAAACCTTATATGGTGATTGTCTCAGGCTCCAGCAGGTTTTAGCTGACTTTTTATTGATTTCCATCAATTTCACACCAAATGGAGGCCAGGTTGTTCTAGCAGCCTCATTAGCAAAACAGCAGTTAGGGAAACTAGTCCATCTTGCTAATTTGGAGCTCAGCATAACACATGATGGTTTTGGGGTTCCAGAAACATTGCTAAACCAAATGTTTGGACGTGATGGTAATGAATCTGAGGAGGGTATCAGCATGCTGATTAGCCGAAAGCTGCTAAAGCTGATGAATGGAGAAGTACGTTATACAAGGGAAGCTGGCAAATCATCTTTCATCTTATCTGTTGAACTTGCCGCAGCTCATAAATCCAAAACTTCAAATTTTGGAAATAATTAA 3414 0.4285 MSSSRPSPSSSNNSGRSRSSRRSARVLAQTTLDAKLHATFEESGSSFDYSNSVRLSPGTGTASGDHQSKSDGVTTAYLHQLQKSKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSSTSIQKALGFGEVSLLNPILVHCKSSGKPFYAIIHRVTGSVIIDFEPVKPHEVPMTAAGALQSYKFAAKAITRLQSLPGGSMQTLCDTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPGLEPYLGLHYPATDIPQATRFLFMKNKVRMIVDCRAKHVKVLQDKKIPFELTLCGSTLRAAHSCHLQYMENMNSSASLVMAVVVNDNDEDGDSSDAVQPQKRKRLWGLVVCHHSTPRFVPFPLRYACEFLAQVFAIHVNKELEIEYQIVEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIREIALWLSECHRDSTGLSTDSLSDAGFPGAATLGDIACGMAAVRISSKDIVFWFRSHTAAEIRWGGAKHEPGERDDGRRMHPRSSFKAFLEVVKTRSLPWKDYEMDVIHSLQLILRNAFKDTESMEISTYAINTRLGDLKIEGMQELEAVTSEMVRLIETATVPILAVDVNGMVNGWNTKIAELTCLPVEQAIGKNLLTLVEDFSVDRVKKMLDMALQGEEEKNVQFEIKTHDLKIDSGPISLVVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNSAMTKLSGWKREEVMDKMLFGEVFGTQIACCRLRNQEAIVNFSIVLNKSMAGLETEKVPFSFFTRDGKHVECLLSVSKKLDAEGVVTGVFCFLQLASPELQQALHIQHLSEQTASKRLKAITYLKRQIQSPLYGIEFSQKLLEGTELGAEQKLFLQTGTRCQRQLSKILDDSDLDSIIDGYLDLEMVEFTLHEVLVASLSQAVSKGNAKGIRVVNDVEEKITTETLYGDCLRLQQVLADFLLISINFTPNGGQVVLAASLAKQQLGKLVHLANLELSITHDGFGVPETLLNQMFGRDGNESEEGISMLISRKLLKLMNGEVRYTREAGKSSFILSVELAAAHKSKTSNFGNN* 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00943 1137 ProSiteProfiles Histidine kinase domain profile. 908 1127 IPR005467 -
Lapu6g00943 1137 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 225 398 IPR016132 -
Lapu6g00943 1137 PRINTS Phytochrome signature 140 162 IPR001294 GO:0006355|GO:0009584
Lapu6g00943 1137 PRINTS Phytochrome signature 556 574 IPR001294 GO:0006355|GO:0009584
Lapu6g00943 1137 PRINTS Phytochrome signature 739 759 IPR001294 GO:0006355|GO:0009584
Lapu6g00943 1137 PRINTS Phytochrome signature 438 458 IPR001294 GO:0006355|GO:0009584
Lapu6g00943 1137 PRINTS Phytochrome signature 719 736 IPR001294 GO:0006355|GO:0009584
Lapu6g00943 1137 PRINTS Phytochrome signature 240 259 IPR001294 GO:0006355|GO:0009584
Lapu6g00943 1137 PRINTS Phytochrome signature 325 346 IPR001294 GO:0006355|GO:0009584
Lapu6g00943 1137 PRINTS Phytochrome signature 627 643 IPR001294 GO:0006355|GO:0009584
Lapu6g00943 1137 PRINTS Phytochrome signature 523 542 IPR001294 GO:0006355|GO:0009584
Lapu6g00943 1137 PRINTS Phytochrome signature 646 661 IPR001294 GO:0006355|GO:0009584
Lapu6g00943 1137 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 963 1117 IPR036890 -
Lapu6g00943 1137 Gene3D - 413 586 IPR043150 -
Lapu6g00943 1137 SUPERFAMILY GAF domain-like 205 405 - -
Lapu6g00943 1137 FunFam Phytochrome 620 751 - -
Lapu6g00943 1137 ProSiteProfiles PAS repeat profile. 757 809 IPR000014 -
Lapu6g00943 1137 CDD PAS 635 741 IPR000014 -
Lapu6g00943 1137 CDD PAS 768 879 IPR000014 -
Lapu6g00943 1137 PANTHER TWO-COMPONENT HISTIDINE KINASE 915 1124 - -
Lapu6g00943 1137 Pfam PAS fold 76 192 IPR013654 GO:0006355
Lapu6g00943 1137 Coils Coil 405 425 - -
Lapu6g00943 1137 Pfam GAF domain 226 408 IPR003018 GO:0005515
Lapu6g00943 1137 Pfam Phytochrome region 421 596 IPR013515 GO:0006355|GO:0009584
Lapu6g00943 1137 SMART HKATPase_4 1013 1125 IPR003594 -
Lapu6g00943 1137 Gene3D PAS domain 770 882 - -
Lapu6g00943 1137 Gene3D - 206 569 IPR029016 -
Lapu6g00943 1137 SUPERFAMILY GAF domain-like 416 594 - -
Lapu6g00943 1137 ProSiteProfiles PAS repeat profile. 624 694 IPR000014 -
Lapu6g00943 1137 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1014 1123 IPR003594 -
Lapu6g00943 1137 Gene3D - 941 1118 IPR036890 -
Lapu6g00943 1137 NCBIfam PAS domain S-box protein 631 747 IPR000014 -
Lapu6g00943 1137 FunFam Phytochrome 413 544 - -
Lapu6g00943 1137 Gene3D PAS domain 81 328 - -
Lapu6g00943 1137 Gene3D PAS domain 618 755 - -
Lapu6g00943 1137 Pfam PAS fold 757 879 IPR013767 GO:0006355
Lapu6g00943 1137 Pfam PAS fold 627 741 IPR013767 GO:0006355
Lapu6g00943 1137 MobiDBLite consensus disorder prediction 1 26 - -
Lapu6g00943 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 194 IPR035965 -
Lapu6g00943 1137 SMART gaf_1 225 418 IPR003018 GO:0005515
Lapu6g00943 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 877 IPR035965 -
Lapu6g00943 1137 PIRSF Phytochrome_conventional 1 1132 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lapu6g00943 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 630 737 IPR035965 -
Lapu6g00943 1137 SMART pas_2 756 825 IPR000014 -
Lapu6g00943 1137 SMART pas_2 626 692 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00943 Lapu-Chr6 9612746 9618407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00943 1 1128 Histidine Kinase Gene Family AT1G09570 75.731 0.0 1793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00943 K12120 - gmx:100791098 1978.37