Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00941 ATGGCGTGGCGTGAGCTTGGAAAGAAGAGAATATATATGAATTTTGCTAGAGCTTTGACTGCAACGCCATTTAGGCATGTGACAGGATCAAATTTTGCATCCATCTTTGCTGCACGATCTGTTTATGCATCAGCAAAATGCATGACAGATTTCATTAACCAATCATCTCAGGGAGTGGCTGGTTTTGGAAGTGAGACTAAAGAATGTGGAATACGGTGCTTCCATGGTAGTTCGCAAGTCTGGGCAAGAAGTGATGGACCATTAGGTCTGAAGACCCCAAAGAGGGTGAAATATGTGAGAAGGGATGGTAGAAACCAGCCACCTGTTAAATCTCCTTATGTCCGTCCTAATATCACAGCTAACAAATCTAGTCCTGATAAAACAGTAGAAATATTCGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACCAGAAAATCAGTATCTTCTTTGCAGGATATCCTCGCTAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCTTCTGAGCATGGATATTGCTGAACTTGCCGCAATGGAGGCTGGCATCAATGTAAAGAGGGTTCACTCCACTGAAGGTGCTGAAATTTTACCTCGTCCTGCAGTTGTAACAGTGATGGGTCATGTTGATCATGGTAAAACTTCTCTTCTTGATGCCTTGCGTCAAACATCAGTGGCAGCCAGGGAGGCTGGGGGCATAACTCAACATCTAGGTGCTTTTGTGGTGGTCATGCCATCAGGAGCATCGATCACATTTCTTGATACTCCTGGTCATGCAGCATTTAGTGCTATGCGTGCAAGAGGTGCTGCAGTTACAGATATAGTGGTGCTGGTTGTTGCTGCAGATGATGGTGTCATGCCTCAAACACTTGAAGCTATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTTAAACTGCAGCTTGCTTCAGAGGGCTTACTGCTGGAGGAGATGGGTGGGGATGTTCAGGTTGTTGAAGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAGGAATCCTTACTACTTCAGGCTGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCGTATGTGGTTGAAGCAAGACTTGACAAAGGACGTGGTCCACTGGTAACTACTATAGTAAAGGCAGGGACTCTGGTTTGTGGTCAGCATGTGGTTGTAGGCTCACAATGGGGAAGAATAAGGGCTATTAAAGATATGGCAGGGAAGTTAACTCAACAAGCAACGCCTGCTATGCCTGTTGAGATCGAAGGGCTTCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGCAAAGGAAATATGAGGAGAACAGGCTAAGGAATAAGATGATACAGGACAAACCAACTACGTCAGATGATTCCACGGAGGTTCCACCGAGGGTTGAAATGCCAGTAATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTCACAGATGCATTGAAAACTTTAAACAGTGCTCAGGTTTTGGTGAATGTTGTCCATGTTGGCGTTGGGCCACTCTCTCAATCTGACGTGGACTTAGCACAAGCTTGCGGTGCTTGCATAGTTGGATTCAATGTCAAAAGTCCTCCAACTGCTCTAAGTCAGTCAGCAACTCGGGCCAGTATCAAGATAATTCTGCACCGTGTAATTTACCACCTCTTAGAGGACATTGGCAACTTGATAATAGAGAAGGCCCCCGGGACTTCTGAAACGCAGGTTGCTGGACAGGCAGAAGTGCTTAACATCTATGAAATCAAAGGGAGCAAGTCGAAGGGTCCTGATGTGAAGATAGCTGGTTGTCGTGTTACTGATGGTCTTGTGACAAGATCAGCAACCATGAGGCTTCTGAGGAGTGGGGAAGTGGTGTTTGAAGGGCATTGTACATCTCTTAAGCGGGAGAAGCAGGATGTGGATACTGTGAAAAAGGGAAATGAGTGTGGATTAGTAATTAGCAATTGGTATGATTTCCAGATTGGAGATGTTATTCAGTGCTTGGAACAAGTTGTAAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2160 0.4477 MAWRELGKKRIYMNFARALTATPFRHVTGSNFASIFAARSVYASAKCMTDFINQSSQGVAGFGSETKECGIRCFHGSSQVWARSDGPLGLKTPKRVKYVRRDGRNQPPVKSPYVRPNITANKSSPDKTVEIFEGMTLVELAKRTRKSVSSLQDILANVGEKVESEFELLSMDIAELAAMEAGINVKRVHSTEGAEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDVQVVEVSATEKIGLDNLEESLLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDMAGKLTQQATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRQRKYEENRLRNKMIQDKPTTSDDSTEVPPRVEMPVIVKADVQGTVQAVTDALKTLNSAQVLVNVVHVGVGPLSQSDVDLAQACGACIVGFNVKSPPTALSQSATRASIKIILHRVIYHLLEDIGNLIIEKAPGTSETQVAGQAEVLNIYEIKGSKSKGPDVKIAGCRVTDGLVTRSATMRLLRSGEVVFEGHCTSLKREKQDVDTVKKGNECGLVISNWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00941 719 NCBIfam small GTP-binding protein domain 201 353 IPR005225 GO:0005525
Lapu6g00941 719 NCBIfam translation initiation factor IF-2 126 702 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lapu6g00941 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 389 IPR027417 -
Lapu6g00941 719 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 497 607 IPR036925 -
Lapu6g00941 719 Pfam Translation-initiation factor 2 497 590 IPR023115 -
Lapu6g00941 719 SUPERFAMILY Translation proteins 603 704 IPR009000 -
Lapu6g00941 719 CDD mtIF2_IVc 608 697 - -
Lapu6g00941 719 MobiDBLite consensus disorder prediction 101 120 - -
Lapu6g00941 719 FunFam Translation initiation factor IF-2 195 370 - -
Lapu6g00941 719 Gene3D - 497 600 IPR036925 -
Lapu6g00941 719 Gene3D Translation factors 371 487 - -
Lapu6g00941 719 Gene3D Translation factors 602 704 - -
Lapu6g00941 719 Pfam Elongation factor Tu GTP binding domain 203 358 IPR000795 GO:0003924|GO:0005525
Lapu6g00941 719 FunFam Translation initiation factor IF-2 496 602 - -
Lapu6g00941 719 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 198 368 IPR000795 GO:0003924|GO:0005525
Lapu6g00941 719 FunFam Translation initiation factor IF-2 603 706 - -
Lapu6g00941 719 CDD IF2_mtIF2_II 374 469 IPR044145 -
Lapu6g00941 719 Gene3D - 196 370 IPR027417 -
Lapu6g00941 719 SUPERFAMILY Translation proteins 372 454 IPR009000 -
Lapu6g00941 719 CDD IF2_eIF5B 202 365 - -
Lapu6g00941 719 Hamap Translation initiation factor IF-2 [infB]. 8 705 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lapu6g00941 719 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 119 713 IPR015760 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00941 Lapu-Chr6 9597234 9603820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00941 199 588 Eukaryotic Initiation Factors Gene Family AT1G21160 27.451 2.28e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00941 K02519 - gmx:100781314 1259.97