Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00937 ATGTTGGGGAGGCAGAGCGAGGTGGAGGTTGGAAAGGCCATACATTCATTCCCAAACGTGGCCTCTCAGCACTGCCCCTTATCATCATCATCTCTCTCACCTCGCTCTATCTCTTTCTCTCCAAACATGGCTTCTCTCATAGGAGTTTCTTCCATTTACCAAACCCCCACTCTCGAACTCTACCAGAGGCCAAACGCTACTTCCACTTCCTCCGTTAGGTTGCAATGTTTGGACTCCAAGTCCCACTTCAACAACCTCCTCAGAGCCCACCGCCACTCCCCTGGGCCCACCTTCAAAACGGGCCTCAAGCCCACTCCCACTTTCCTCCCCTCCGCCGTCGCCACTCCCAATTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTCGGCCGCGACTTCGACCAAAACCTCCACGAATTCCAACACGCCTCCGAACCCCCCAACTCCGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTTGATTCCCTCCAGAGCCGTGGGATTACTCACCTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTACAAGGTAGAGATATCATTGCTCGAGCGAAGACCGGTACTGGAAAGACACTAGCGTTCGGAATTCCAGTTATTAAAGGTCTCACTGAAGATGAAGATGAACCTTCTCTCAGAAGGTCTGGTAGGCTTCCCAGAGTTTTGGTGCTGGCACCTACGAGGGAGTTAGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCGCCTTATCTCAACACTGTTTGTGTTTATGGCGGTGTTTCTTATGTTAGTCAGCAGAGTGCTCTTTCACGAGGTGTAGATGTGGTGGTCGGGACCCCTGGGAGAATAATTGACTTGATTAACGGGAAGAGCCTTAAGCTGAATGAGGTTCAGTATTTGGTGCTTGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAGGTGATTTTGGAGAATCTCCCTTCTCAGAGGCAGAGCATGCTTTTCTCTGCCACCATGCCTGCTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAACCCACTCACAATTGATTTGGTTGGTGATGAAGAAGAGAAGCTCGCAGAAGGGATAAAACTTTATGCTATAGCAGCAACTGCCACTTCAAAGCGGACAATTCTCTCTGATCTTGTAACTGTTTATGCAAAGGGTGGGAAGACTATAGTATTTACACAGACAAAAAAAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAACATCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGCGAACATTGAATGGTTTTCGGCAAGGAAAATTCACAGTGCTTGTTGCTACTGATGTAGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTCGTGCATCGCTCTGGTCGTACTGGTCGTGCTGGAAAACAAGGTACTGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAACGTGATGTAGGCTGCAAGTTTGAATTTGTTAGTCCACCATCTATGGAAGAGGTCTTAGGGTCTTCTGCTGAGCAGGTTGTTGCTACACTTAGTGGAGTTCATCCCGAGTCTATTCAGTTTTTCACCCCAACTGCACAAAAACTGATTGATGAACAAGGAACAACTGCCCTTGCAGCTGCACTTGCTCAACTCAGTGGATTTTCCCGACCTCCATCATCACGATCACTTATCACCCATGAACAGGGATGGACTACGTTGCAACTAACTAGGGATTCAGATAATAGGAGATACTTTTCAGCAAGATCAGTCACTGGATTTCTTTCTGATGTTTTTTCATCAGCTGCTGATGAAGTTGGAAAAATCCATATAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCCGAGGAGATTGCTAAAGAGTTACTTAACAAGGAGATACCACCTGGAAACACCATTTCCAAGGTCACCAAGCTACCTCCTTTGCAAGATGATGGTCCTCCAAGTGATTTCTATGGGAAGTTCTCTGACAGAGAACGAAGTAACCGAAGAGGATCTACTTCTAGGGGAGGTTTTACTTCAAGGGGAGGTTTTGCTTCCAGGGACCGGAGAGGTTTTAAAACCTCACGGGGATGGGATGGGGAAGACTCTGATGGCGACGACTTCGGTGATCGATCTAGCAGGAGAGGTGGTAGAAATTTTAAAACTGGCGGCAATAGCTGGTCTCGAGCAGGAGGTAAAACCAGTGGTGATGATTGGCTAATTGGGGGTAGACGATCAAGCAGGCCTTCATCATCAGACAGATTTGGAGGGGCCTGTTTTAATTGTGGGGAATCTGGGCATCGTGCATCAGATTGTCCAAGCACTTCAAACCGGCGAAGCTTTTTTTAA 2442 0.4738 MLGRQSEVEVGKAIHSFPNVASQHCPLSSSSLSPRSISFSPNMASLIGVSSIYQTPTLELYQRPNATSTSSVRLQCLDSKSHFNNLLRAHRHSPGPTFKTGLKPTPTFLPSAVATPNSSLLSEEAFKGLGRDFDQNLHEFQHASEPPNSDELDISKLDLPSRLVDSLQSRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPVIKGLTEDEDEPSLRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVSQQSALSRGVDVVVGTPGRIIDLINGKSLKLNEVQYLVLDEADQMLAVGFEEDVEVILENLPSQRQSMLFSATMPAWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKKDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGCKFEFVSPPSMEEVLGSSAEQVVATLSGVHPESIQFFTPTAQKLIDEQGTTALAAALAQLSGFSRPPSSRSLITHEQGWTTLQLTRDSDNRRYFSARSVTGFLSDVFSSAADEVGKIHIIADERVQGAVFDLPEEIAKELLNKEIPPGNTISKVTKLPPLQDDGPPSDFYGKFSDRERSNRRGSTSRGGFTSRGGFASRDRRGFKTSRGWDGEDSDGDDFGDRSSRRGGRNFKTGGNSWSRAGGKTSGDDWLIGGRRSSRPSSSDRFGGACFNCGESGHRASDCPSTSNRRSFF* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00937 813 FunFam ATP-dependent RNA helicase RhlE 143 363 - -
Lapu6g00937 813 Pfam Helicase conserved C-terminal domain 387 494 IPR001650 -
Lapu6g00937 813 Pfam Zinc knuckle 789 805 IPR001878 GO:0003676|GO:0008270
Lapu6g00937 813 MobiDBLite consensus disorder prediction 749 763 - -
Lapu6g00937 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 515 IPR027417 -
Lapu6g00937 813 SMART ultradead3 171 377 IPR014001 -
Lapu6g00937 813 FunFam Nucleolar RNA helicase II 382 572 - -
Lapu6g00937 813 MobiDBLite consensus disorder prediction 666 788 - -
Lapu6g00937 813 MobiDBLite consensus disorder prediction 794 813 - -
Lapu6g00937 813 MobiDBLite consensus disorder prediction 799 813 - -
Lapu6g00937 813 Pfam GUCT (NUC152) domain 581 680 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lapu6g00937 813 CDD DEADc 163 361 - -
Lapu6g00937 813 SUPERFAMILY Retrovirus zinc finger-like domains 775 809 IPR036875 GO:0003676|GO:0008270
Lapu6g00937 813 Gene3D - 378 570 IPR027417 -
Lapu6g00937 813 ProSiteProfiles Zinc finger CCHC-type profile. 790 805 IPR001878 GO:0003676|GO:0008270
Lapu6g00937 813 SMART c2hcfinal6 789 805 IPR001878 GO:0003676|GO:0008270
Lapu6g00937 813 Pfam DEAD/DEAH box helicase 176 349 IPR011545 GO:0003676|GO:0005524
Lapu6g00937 813 SMART helicmild6 414 494 IPR001650 -
Lapu6g00937 813 MobiDBLite consensus disorder prediction 717 748 - -
Lapu6g00937 813 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 534 IPR001650 -
Lapu6g00937 813 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 135 696 - -
Lapu6g00937 813 MobiDBLite consensus disorder prediction 688 702 - -
Lapu6g00937 813 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 360 IPR014001 -
Lapu6g00937 813 Gene3D - 153 364 IPR027417 -
Lapu6g00937 813 CDD SF2_C_DEAD 374 503 - -
Lapu6g00937 813 CDD GUCT_Hera 588 667 - -
Lapu6g00937 813 Gene3D - 762 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00937 Lapu-Chr6 9559989 9566169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00937 110 516 Eukaryotic Initiation Factors Gene Family AT1G72730 35.194 8.14e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00937 - - gmx:100789516 1287.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00937 6 9559989 9566169 Lapu7g00484 7 5527111 5534984 ECH
Lapu6g00937 6 9559989 9566169 Lapu6g00937 6 9559989 9566169 ECH
Lapu6g00937 6 9559989 9566169 Lapu7g00484 7 5527111 5534984 PCT