Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00924 ATGGGAAGGCATTCCTGCTGTTACAAGCAGAAACTTAGGAAGGGTCTGTGGTCACCAGAGGAGGATGAAAAACTTCTGAGGCATATTACTAAGTATGGTCATGGTTGTTGGAGCTCGGTTCCTAAGCAAGCAGGTTTGCAGAGGTGCGGCAAGAGCTGCAGGCTTCGGTGGATCAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTTTCACAAGAGGAGGAAAATCTTATCATTGAACTTCATGCAGTGTTAGGGAACAGATGGTCTCAAATTGCAGCACAATTGCCTGGGAGGACTGACAATGAAATTAAAAATCTGTGGAATTCTTGCCTGAAGAAGAAACTGAGGCAAAGAGGTATAAACCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGGTGAGGAGGAGAAAACAAGGAGCCAAGAATTATCCAATGAATTGAACCTCCTGAATTCTGAGAGCTTCAAGTCAGATGAAGGGTCCTATGAGCAGAGAGCATCTTCGATTGCCCCCAAAGCCTATGAGATGGAAGGTTCTTGCAGCTCCAAGATTAACACCAAAAACGACACCAACTTGATAGCCAATTGTTCCAACAAAGACTTGTTTCTAGACAGCTACACCACTAGTTGCCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAGATGACTGACACTCTCCCAACCAATTCAAACTCTAGCCATTGGTTCGGTCCAACTGCAAGACCCTTTGATATAAACTCTGAGTTTACTTCCAATGTTATGTCCATTCTTCCACCTGCAACAACCTCATTTCTCCCTAGCACTTCTTTTTGCTACAAGCCATCACTTGCTGTCCCTTCAGAAGACATTTCAACACCTTCTTTTGCTTTGAATGGACCCAATTACTGGGAACCGAGTGCCTCCAACAACAGCAATGGCAGCAACACAAGTGATGGCAGCAGAGAGTTGACAAGTAGCAAGAACAGTGTCCTCTCTTCTTGGGGAATGACAGAAGAAGCCAAGTGGTCTGAGTACCTCCACAACCCAATGTTGATGCTGGCAGCTCCTGAATCATTGTGCAACCAAATTAGGCCAGCCACGCATTTGGTACCTGATAACACTTTAGGGTCCATAATGCCTGGTTCCAAGGAGCAACATCAGTCCCAAACTTCTACCATCTTTTCCAAGGACATCCAGAAGCTAACAGCAGCGTTTGGACATATATAA 1215 0.4486 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGINPVTHKPLSEVENGEEEKTRSQELSNELNLLNSESFKSDEGSYEQRASSIAPKAYEMEGSCSSKINTKNDTNLIANCSNKDLFLDSYTTSCQPSDLMGNYPLQMTDTLPTNSNSSHWFGPTARPFDINSEFTSNVMSILPPATTSFLPSTSFCYKPSLAVPSEDISTPSFALNGPNYWEPSASNNSNGSNTSDGSRELTSSKNSVLSSWGMTEEAKWSEYLHNPMLMLAAPESLCNQIRPATHLVPDNTLGSIMPGSKEQHQSQTSTIFSKDIQKLTAAFGHI* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00924 404 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lapu6g00924 404 MobiDBLite consensus disorder prediction 130 144 - -
Lapu6g00924 404 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu6g00924 404 Gene3D - 69 145 - -
Lapu6g00924 404 FunFam MYB transcription factor 68 140 - -
Lapu6g00924 404 Gene3D - 11 67 - -
Lapu6g00924 404 MobiDBLite consensus disorder prediction 122 149 - -
Lapu6g00924 404 SMART sant 13 63 IPR001005 -
Lapu6g00924 404 SMART sant 66 114 IPR001005 -
Lapu6g00924 404 FunFam Myb transcription factor 11 67 - -
Lapu6g00924 404 CDD SANT 17 61 IPR001005 -
Lapu6g00924 404 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lapu6g00924 404 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu6g00924 404 PANTHER MYB DOMAIN PROTEIN 55 1 328 - -
Lapu6g00924 404 Coils Coil 135 155 - -
Lapu6g00924 404 MobiDBLite consensus disorder prediction 302 326 - -
Lapu6g00924 404 CDD SANT 69 109 IPR001005 -
Lapu6g00924 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu6g00924 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu6g00924 404 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00924 Lapu-Chr6 9420334 9422312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00924 1 156 MYB Transcription Factor Family AT4G01680 83.974 1.43e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu6g00924 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00924 K09422 - gmx:100037467 729.554