Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00922 ATGATTCAGAAGATGCTTGACTCCACTCGCTCGGCTATGACAAAAAGCTCCTCCCATGTAGCCTCCATTTGTGAAAATGATTTCCTTGAGCTGGTGTGGGAAGATGGTGAGGTTGTTGTACGAGGAGGTTCATCAAATAGATCACGAAAGACTAACGAGGAAAGAGTATACGAAGATGTCAGCATAAAAACAACAAGGTTGAACCCTTTATACTCACTTGAAGACCACTTTCACCCTCTAAAGGAATCTTACATGAGCTCTTCATATCAAAGCAATGCCCAAGATTCGTGTCATTCCGCCCAAAACAAGAATTCCTGCAAGCTTAACGAAGAATTTGAAAACTTACTAAGACCAGCAAAAGACTCTAAGCCCGTTACCCCAGGCTCTAGTCTCTTACAACAGTGCTTACCTTCATCTCCTCTCAAGAAACAAAGAACAGATTCAAGCCAAACAACACCACCAGCAAACACACGGAACTTGGGGTGTGATCAAAGAACTGCTAAAGTGAACTTCTCCAATTTTTCAATACCTGCAGTGTTTCTCAAATCTAGTACTTGCATGGGAAACAGTGCAACTCAGCAGACAAAAAACCATTCATCTCCAGCAAGAGTGGAGGAGATTGAAGCACCCAAGGCTGAGAAATCAACTAAAGAATCACAAGGGTTTCAAAAGCAAACATCCTTAACCGTCGAAAGAAGTGCAAAGCCACCCCCACCCCTTGATGAGCATTCTGAAGCTATTGGTATTGGAATTCACAGATTCCAAGGTCAACTACGTTGTGACCAAACCTCAGGCTCAGAAGCACTTAGAGCCAAGGAAAAAGCTTATAATCGTAATAACACTATGTGTCAAGAACCATTCCTAGCTTCTTCTTCTGTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCTTGGTATCAGGAAACATGAGGACACTGATGACTCAATATATTTAAGTGATAATGACGAAGAGCCTGAAGATATGGTAAAGCAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAATGCTGTAGTTCATAACTTATCTGAAAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAACAAGGTGGACAAAGCATCAATGCTTGACGATGCAATAGACTATCTGAAGACTCTAAAGCTTCAGTTACAGATGATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCAGCTGCCGCAGCGCATCACATGAATGGACCACATTTACCCCAGTTAATGGGAGCTGGAATGGGATTCAGACCACCACAGCTTCCTATCCCACCACTTTCTGCTATAACAGACAGCAGACTTCATCAGATGTTTGGTTTCCCCAACCAAATACCACCCATGCCAATGCCTCATGCACCTTTCTTCCCCATCATTGGAAATTCTCCCACACAACCACACTTGGCCGCCACCACCACACCTACCACCAACTTGGCACAACAGCTCGCTAAATCTGCTGCATCTCTTCAGGACTCACTCCCAAACAGCTTGGACCCTCTTGAAAATGCAACAAAGCAACTGCAGAATCCGGTCTCCTTTCATCACCACGGCACTAGTCCTCCACTAGCCACCCCTTTCATTTTTCCACAAAAGTAG 1644 0.441 MIQKMLDSTRSAMTKSSSHVASICENDFLELVWEDGEVVVRGGSSNRSRKTNEERVYEDVSIKTTRLNPLYSLEDHFHPLKESYMSSSYQSNAQDSCHSAQNKNSCKLNEEFENLLRPAKDSKPVTPGSSLLQQCLPSSPLKKQRTDSSQTTPPANTRNLGCDQRTAKVNFSNFSIPAVFLKSSTCMGNSATQQTKNHSSPARVEEIEAPKAEKSTKESQGFQKQTSLTVERSAKPPPPLDEHSEAIGIGIHRFQGQLRCDQTSGSEALRAKEKAYNRNNTMCQEPFLASSSVCSLGASNDPNLGIRKHEDTDDSIYLSDNDEEPEDMVKQDREGNRVKRSRNAVVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQMMSMGSGLWPLMMLPAAAAHHMNGPHLPQLMGAGMGFRPPQLPIPPLSAITDSRLHQMFGFPNQIPPMPMPHAPFFPIIGNSPTQPHLAATTTPTTNLAQQLAKSAASLQDSLPNSLDPLENATKQLQNPVSFHHHGTSPPLATPFIFPQK* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00922 547 Pfam Helix-loop-helix DNA-binding domain 346 391 IPR011598 GO:0046983
Lapu6g00922 547 CDD bHLH_AtPIF_like 342 404 IPR047265 -
Lapu6g00922 547 Gene3D - 338 400 IPR036638 GO:0046983
Lapu6g00922 547 MobiDBLite consensus disorder prediction 189 244 - -
Lapu6g00922 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Lapu6g00922 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 406 IPR036638 GO:0046983
Lapu6g00922 547 MobiDBLite consensus disorder prediction 119 161 - -
Lapu6g00922 547 MobiDBLite consensus disorder prediction 126 161 - -
Lapu6g00922 547 MobiDBLite consensus disorder prediction 201 218 - -
Lapu6g00922 547 FunFam Basic helix-loop-helix transcription factor 337 400 - -
Lapu6g00922 547 SMART finulus 348 397 IPR011598 GO:0046983
Lapu6g00922 547 MobiDBLite consensus disorder prediction 527 547 - -
Lapu6g00922 547 MobiDBLite consensus disorder prediction 323 340 - -
Lapu6g00922 547 MobiDBLite consensus disorder prediction 317 340 - -
Lapu6g00922 547 PANTHER TRANSCRIPTION FACTOR PIF3 2 513 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00922 Lapu-Chr6 9381344 9384285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00922 297 445 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 43.407 1.51e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g00922 HLH 3.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00922 K12126 - gmx:100784724 676.011