Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00918 ATGGAGAACCAACACCACCGTGAATTGACCTTCTTAAGCTCCGGCGGCGACTTCCTCAACCCCCCTTTAGATCACACAGCCCACAACACTCATCCTCCCATCAAAGAAATGGACTTCTTCTCATCACCTTCACCCCCACCTACTAATAAAAACAACACTACCAATCATATCAACCATCATAATCAGAATCAAGATCACACTCATGCCCAAGGATCACCAACACACCTCACTCATCACCCTGTAAACACCGGACTGAATTTAACTTGTGCAAGTACTGGAGTGACAAAGGAAGAAAATGGTGAAAATCCTGAAGCTGAGCTGAGTTCTCTTGAAAGTCAATTGCGGAGACTACAAGAAGAGAATCGCAAGTTGAGAACTGTGCTGGACCAGATTACCAAAAGCTATACCCAACTACAAGCTCAGCTGTTCATCACTCTGCAGAAACAAAAGCTTCCTCAGAATACAGAAGCAAATGGGATTGTGTCGGAACAAAAAAATGTGGACCCAGCTGGAGCATGCAGCAAGTTAGAGGTGGTGAATGATGCATCGGTTTGTGATGAAAAGACTGATGGTGAGGTATCGGTGTGTCGCTCAAACAACGCGGAGGTATTGTCAAAGACACATGAAGAGGCTCCTCAATTGACTAAACTGAATCTTGGAAAACAGGCTTGTCCTGAAGCTGCAGAAGATGTTCTTGACCGGTCCTCCTCACAGAGCTGGGGCTCATCCAAGTTAGAAGAACAACCCAAAACTGCAGAACAAGCTGTTGCAGATCAGATTCCTCTCAGGAAGGCCAGGGTTTCCGTACGAGCTAGGTCAGAAGCTCCACTGATCAGCGATGGATGCCAGTGGAGAAAATATGGACAAAAAATGGCGAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGCACTATGGCTGTAGGATGCCCAGTCCGAAAACAGGTACAGAGATGCGCAGAAGACAAGATAGTGTTGATTACAACGTACGAAGGCAATCACAATCACCCTCTGCCACCAGCTGCCACTGCCATGGCAAGTACCACTGCAGCAGCCGCCGCCATGCTCCTTTCAGGTTCAACACCTAGCAAGGAAGGCCTCACAAACTCCGCGGGATATTACTCTTCACTTCCCTATGCTTCAATGGCAACCCTATCAGCTTCAGCACCATTCCCAACCATTACTCTTGACTTGACCCAAAACCCCAGCGCCATGCACCTCCACCGCGTACCACCCCATGCCACTACGTTCCCTCTCCCACTGCATGCTTCCGGTGGTCCCCACCTTCTAGGTCACCCCTTGCTCTTCTCACAGAAGCCTCCACCTGCGACATCACCCCTTCTTCATCCACGACAACCTTCGTCTATGGTCGAAACAGTTAGTGCAGCCATTGCTTCGGATCCCAACTTCACTGCAGCTTTGGCAGCAGCAATCTCCTCAATCATTGCAGTACCAAGAGGCAGCGATGGTAACAACAATGGAACCGGTGGTGCTATGCCTGGGTCACCGCAGCTTCCTCAGTCATGCACTACTTTCTCCACCAACTAG 1548 0.4935 MENQHHRELTFLSSGGDFLNPPLDHTAHNTHPPIKEMDFFSSPSPPPTNKNNTTNHINHHNQNQDHTHAQGSPTHLTHHPVNTGLNLTCASTGVTKEENGENPEAELSSLESQLRRLQEENRKLRTVLDQITKSYTQLQAQLFITLQKQKLPQNTEANGIVSEQKNVDPAGACSKLEVVNDASVCDEKTDGEVSVCRSNNAEVLSKTHEEAPQLTKLNLGKQACPEAAEDVLDRSSSQSWGSSKLEEQPKTAEQAVADQIPLRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKIVLITTYEGNHNHPLPPAATAMASTTAAAAAMLLSGSTPSKEGLTNSAGYYSSLPYASMATLSASAPFPTITLDLTQNPSAMHLHRVPPHATTFPLPLHASGGPHLLGHPLLFSQKPPPATSPLLHPRQPSSMVETVSAAIASDPNFTAALAAAISSIIAVPRGSDGNNNGTGGAMPGSPQLPQSCTTFSTN* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00918 515 Pfam WRKY DNA -binding domain 280 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00918 515 SUPERFAMILY WRKY DNA-binding domain 271 339 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g00918 515 ProSiteProfiles WRKY domain profile. 273 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00918 515 Gene3D WRKY domain 263 340 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g00918 515 SMART WRKY_cls 278 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00918 515 MobiDBLite consensus disorder prediction 42 87 - -
Lapu6g00918 515 MobiDBLite consensus disorder prediction 232 253 - -
Lapu6g00918 515 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 95 486 IPR044810 GO:0003700
Lapu6g00918 515 MobiDBLite consensus disorder prediction 491 515 - -
Lapu6g00918 515 MobiDBLite consensus disorder prediction 1 87 - -
Lapu6g00918 515 FunFam probable WRKY transcription factor 31 263 340 - -
Lapu6g00918 515 Coils Coil 100 141 - -
Lapu6g00918 515 MobiDBLite consensus disorder prediction 232 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00918 Lapu-Chr6 9338278 9342458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00918 93 482 WRKY Transcription Factor Family AT4G04450 46.024 4.47e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu6g00918 WRKY 6.9e-24 CL0274