Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00913 ATGATGAGCCATGGGAATGACTTGCATGCTGAAGAGCTTAAACATGATGAGAGAGCGGCACCAGAGAGCACCACAAACGGGGAAAAGAGACAACAAAAAGAAAAGGCTGAAACGGTTCCATATCACAGGCTGTTCTTATTTGCAGACTCCCCTGACATCATTTTGATGGTTGTTGGCACCATTGGAGCCATTGGCAATGGCCTTGGGATGCCTCTCATGGCATTGGTTTTCGGGGAACTCATTGATAGCTTTGGCAATAACCAATTTGGCTCCAACGTTGTCAAACAAGTTTCCGAGGTCTGCCTGAAATTTGTGTACTTAGGAATAGGCACTGGCCTGGCTGCTTTCCTCCAGGTGACTTGCTGGATGGTCACAGGGGAAAGACAGGCTGCAAGAATAAGGGGCTTATACTTGAAAGCTATACTAAGACAGGATATTGCTTTCTTTGATAAGGAAACTAACACTGGAGAGGTGATAGGGAGGATGTCCGGTGACACTGTTCTCATACAAGATGCTATGGGTGAGAAGGTTGGGAGATTTCTGCAGCTAATAGCAACCTTTTTGGGGGGCTTTGTGATAGCATTTATCAAAGGGTGGCTTCTAACTGTTGTCATGTTATCCGTTGTTCCACTTATTACTACTGCTGGCGCTGCTACGGCCCTTATCATAGGAATGATGGCAAGCCGAGCCCAAAGCGCCTATGCGAAAGCTTCACGTGTAGTTGAAGAGACAGTAGCTTCAATAAGAACTGTTGCATCCTTTACAGGGGAAAAGCAAGCAGTGGCCACTTACAAGAAATTTCTTGCAGATGCTTATAAATCAGGAGTTCATGAAGGTTTAGCAGGTGGAATGGGTCTTGGCACAGTTATGTTAGTTATGTTCTGCGGTTATGCTTTGTCTGTATGGTTTGGCGCAAAGATGATAATAGAAAGAGGATATGGTGCGGGTGCAGTGGTGAATGTGATTGTTGCTGTGTTAAATGCATCCATGTCTCTTGGTCAGGCATCTCCTTCCATGAGTGCTTTTGCTGCAGGTCAAGCAGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAACCCGAGATAGATGCTTATGACCCAAACGGGGAAAACCGAGAGGATATTCATGGTGAAATCCATTTAAGGGATGTTTATTTCAGCTATCCAGCCAGACCTGAGGAGTTGATATTCAATGGATTCTCTCTTCATATAGCTAGTGGCACCACTGCAGCTTTAGTTGGGCAAAGTGGAAGTGGGAAGTCTACAGTTATCAGTTTAATTGAAAGATTCTATGATCCACAGGCTGGTGAAGTTCTTATTGATGGCACTAATGTGAAAGAATTTCAGCTTAGATGGATCAGAGGAAAAATTGGCCTTGTTAGCCAGGAGCCAGTGTTGTTTGCATCTAGCATTAAGGATAATATTGCGTATGGAAAAGATGGAGCTACAGTTGAAGAGATAAGAAGTGCAGCTGAACTTGCAAATGCTGCTAAATTCATCGACAAACTGCCACAGGGATTGGACACAATGGTTGGTGAGCATGGAACTCAACTATCCGGTGGACAGAAGCAGCGCATTGCCATTGCAAGAGCAATTCTGAAAGATCCAAGAATTTTACTTTTAGATGAAGCAACAAGTGCACTTGATGCAGAGTCAGAAAGAATAGTGCAAGAAGCTCTAGACAGGATCATGGTCAACAGAACTACTGTCATTGTCGCACATCGCCTAAGCACCGTGAGAAATGCTGATATGATTGCTGTACTTCATATGGGGAAAATGGTTGAGAAAGGAACACACGTAGAATTAAGCAAGGATCCCGAAGGAGCATACTCTCAACTTATACGTTTACAAGAAGGAAACCAGGAATCAGAAGAAACGAGAGACAGCCAAAACAAGAGGGAACTTTCCTCGGAATCTTTTAGAAAGTCGAGTCAAAGGCTGTCATTTCGAAGATCTGGATCATCTTTGGCGAACAGTAGCCGCCACTCTTTTTCAGTTTCATTTGGTTTACCTACGGCAGTTAGCATCCCTGATCCTGACCTTGAAAACTCACAGCCTCAAGAAAAATCGCCAGAAGTTTCACTCCGGCGCCTTGCTTCCCTCAACAAGTCAGAGATTCCAGTGCTTCTGATTGGATGTGTGGCTGCCATAGCAAATGGTGTTATATTTCCAATATTTGGCGTATTGCTCTCCAGTGTTATCAAAACATTTTTTAAACCATTTCCTGAGATGAAAAAGGATTCCAAGTTTTGGGCACTCATGTTTGTGATCCTTGGAATTGGATCTGTACTAGCAATTCCAGCCAGAACTTACTTTTTCTCAGTGGCAGGCAGTAAGTTAATCCGACGAATCAGGCTCATTTGTTTTGAGAAGGTGATCAACATGGAGGTTGGTTGGTTTGATGACCCTGAGAACTCTAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCAGTGCGTGCCCTTGTTGGTGATGCTCTAGGACTCCTGGTCCAAAATATAGCAACAGCATTGACAGGTTTGATTATTGCTTTCGTTGCGAGCTGGCAATTGGCGTTTATTATTCTTGTCTTGGTTCCCCTTATTGGAATGAATGGCTATATCCAAATGAAATTCATGAAGGGATCCAGCACAGATGCAAAGGTGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTAGCTTCTTTCTGTGCAGAGCGGAAAGTTATGGAACTATACAGGAAGAAATGTGAAGGTCCCATGAAAGCAGGGATTCGACAAGGCTTGATAAGTGGAACAGGATTCGGTCTTTCATTTTTCTTGCTCTTTAGTGTCTATGCAACCAATTTCTATGCTGGAGCCAGATTTGTAGAAGCTGGCAAGGCATCATTCTCAGATGTTTTTCGGGTTTTCTTTGCTTTAACTATGGCATCTGTTGGAATTTCCCAATCAAGCTCCCTTGCTCCTGATTCTAGCAAAGCCAAGATAGCAACCGCTTCCATATTCAGAATAATTGATAGGAAATCGAAGATAGACCCCAGTGATGAGATCGGTAACACACTGGATAGTGTAAAAGGAGAAATACAGATTTGTGATGTCAGCTTTAAGTATCCATCTAGGCCAGATGTACAAATTTTTCGAGACTTAAGCTTGACTATCCATTCAGGCAAGACTGTGGCCCTTGTTGGTGAAAGTGGGAGTGGAAAATCCACGGTGATTGCCTTGCTACAAAGATTTTATGATCCTGATTCTGGCCAAATAACAATTGACGGGGTAGAAATTCAGAATTTAAATATCAAGTGGTTAAGGCAGCAGATGGGACTTGTAAGCCAAGAGCCGGTCTTGTTCAACGACACCATCCGTTCCAATATTGCATATGGAAAGGAAGGCAATGCTACTGAAGCAGAAGTCATAACCGCAGCAAAAATGGCCAATGCACATGGGTTTATTAGTGGCTTAGAACAGGGTTATGATACAGTAGTGGGAGAAAGGGGAATCCAACTATCTGGTGGGCAGAAGCAAAGGGTGGCCATTGCACGTGCTATAATTAAAAGTCCGAAGATATTGCTACTTGATGAGGCCACAAGTGCACTAGACGCTGAGTCAGAGAGAGTTGTTCAAGGTGCCTTAGACAAAGTGATGGTGAGCACGACCACTGTGGTTGTGGCTCATCGTTTATCTACAATAAAAAATGCAGATGTTATTGCAGTGGTAAAAAATGGCGTTATAGTGGAGAAGGGAAGGCATGACACACTCGTTAACGTCAAGGATGGATTTTATGCTTCCTTAGTCCAACTTCGTACAAGTTCTACAACACCGTGA 3831 0.4349 MMSHGNDLHAEELKHDERAAPESTTNGEKRQQKEKAETVPYHRLFLFADSPDIILMVVGTIGAIGNGLGMPLMALVFGELIDSFGNNQFGSNVVKQVSEVCLKFVYLGIGTGLAAFLQVTCWMVTGERQAARIRGLYLKAILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGRFLQLIATFLGGFVIAFIKGWLLTVVMLSVVPLITTAGAATALIIGMMASRAQSAYAKASRVVEETVASIRTVASFTGEKQAVATYKKFLADAYKSGVHEGLAGGMGLGTVMLVMFCGYALSVWFGAKMIIERGYGAGAVVNVIVAVLNASMSLGQASPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGENREDIHGEIHLRDVYFSYPARPEELIFNGFSLHIASGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGTNVKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGATVEEIRSAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVLHMGKMVEKGTHVELSKDPEGAYSQLIRLQEGNQESEETRDSQNKRELSSESFRKSSQRLSFRRSGSSLANSSRHSFSVSFGLPTAVSIPDPDLENSQPQEKSPEVSLRRLASLNKSEIPVLLIGCVAAIANGVIFPIFGVLLSSVIKTFFKPFPEMKKDSKFWALMFVILGIGSVLAIPARTYFFSVAGSKLIRRIRLICFEKVINMEVGWFDDPENSSGAIGARLSADAASVRALVGDALGLLVQNIATALTGLIIAFVASWQLAFIILVLVPLIGMNGYIQMKFMKGSSTDAKVMYEEASQVANDAVGSIRTVASFCAERKVMELYRKKCEGPMKAGIRQGLISGTGFGLSFFLLFSVYATNFYAGARFVEAGKASFSDVFRVFFALTMASVGISQSSSLAPDSSKAKIATASIFRIIDRKSKIDPSDEIGNTLDSVKGEIQICDVSFKYPSRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITIDGVEIQNLNIKWLRQQMGLVSQEPVLFNDTIRSNIAYGKEGNATEAEVITAAKMANAHGFISGLEQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQGALDKVMVSTTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHDTLVNVKDGFYASLVQLRTSSTTP* 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00913 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 617 IPR027417 -
Lapu6g00913 1276 ProSitePatterns ABC transporters family signature. 518 532 IPR017871 GO:0005524|GO:0016887
Lapu6g00913 1276 FunFam ABC transporter B family member 1 369 618 - -
Lapu6g00913 1276 FunFam ABC transporter B family member 9 998 1019 - -
Lapu6g00913 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 710 996 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00913 1276 Pfam ABC transporter transmembrane region 709 981 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00913 1276 Pfam ABC transporter transmembrane region 57 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00913 1276 SUPERFAMILY ABC transporter transmembrane region 691 1015 IPR036640 GO:0005524|GO:0016020
Lapu6g00913 1276 Gene3D - 1021 1271 IPR027417 -
Lapu6g00913 1276 Gene3D - 369 618 IPR027417 -
Lapu6g00913 1276 MobiDBLite consensus disorder prediction 616 646 - -
Lapu6g00913 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1031 1268 IPR003439 GO:0005524
Lapu6g00913 1276 ProSitePatterns ABC transporters family signature. 1171 1185 IPR017871 GO:0005524|GO:0016887
Lapu6g00913 1276 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 340 - -
Lapu6g00913 1276 CDD ABC_6TM_Pgp_ABCB1_D2_like 699 1014 - -
Lapu6g00913 1276 Pfam ABC transporter 398 546 IPR003439 GO:0005524
Lapu6g00913 1276 Gene3D ABC transporter type 1, transmembrane domain 998 1020 IPR036640 GO:0005524|GO:0016020
Lapu6g00913 1276 Gene3D ABC transporter type 1, transmembrane domain 689 997 IPR036640 GO:0005524|GO:0016020
Lapu6g00913 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 344 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00913 1276 SUPERFAMILY ABC transporter transmembrane region 42 363 IPR036640 GO:0005524|GO:0016020
Lapu6g00913 1276 PANTHER ABC TRANSPORTER B FAMILY 17 618 IPR039421 -
Lapu6g00913 1276 FunFam ABC transporter B family member 1 1021 1271 - -
Lapu6g00913 1276 FunFam ABC transporter B family member 1 689 997 - -
Lapu6g00913 1276 Gene3D ABC transporter type 1, transmembrane domain 43 634 IPR036640 GO:0005524|GO:0016020
Lapu6g00913 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1268 IPR027417 -
Lapu6g00913 1276 Pfam ABC transporter 1050 1199 IPR003439 GO:0005524
Lapu6g00913 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 379 615 IPR003439 GO:0005524
Lapu6g00913 1276 CDD ABC_MTABC3_MDL1_MDL2 1031 1269 - -
Lapu6g00913 1276 MobiDBLite consensus disorder prediction 1 36 - -
Lapu6g00913 1276 MobiDBLite consensus disorder prediction 620 640 - -
Lapu6g00913 1276 CDD ABC_MTABC3_MDL1_MDL2 379 617 - -
Lapu6g00913 1276 FunFam ABC transporter B family member 9 43 376 - -
Lapu6g00913 1276 SMART AAA_5 406 594 IPR003593 GO:0016887
Lapu6g00913 1276 SMART AAA_5 1058 1251 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00913 Lapu-Chr6 9291511 9296967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00913 13 1275 Calmodulin-binding Proteins AT2G36910 43.916 0.0 1048