Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00906 ATGTCTGGAAAAATAATTATCTCCGCTGTTTCTCTCATTCTCGTCGTCGGTGTTGCCATCGGCGTTGTGGTGACCGTTAACAAGAAGGGTGACGAACCCGCCATCCAAACCAATCAAAAATCCGTTGGGATTATCTGTCAAAACACCGATGACCAAAAACTCTGCCACGACACTCTCAGCTCCGTCAAGGGTCTTGAGACCGCTGACCCCAAGGCTTACATCGCCACGGCGGTGAAAGCCACCATGGACAGCGTCATCAAAGCCTTTAACATGAGTGACAGGCTCACAACCGAGCACGCAGACAAAGACAATGGCATTAAGATGGCCCTCGACGACTGCAAGGACTTGCTGCAATCCGCCATCCAGAGTCTTCAGCTCAGCACTGATATGGTGCAGAACAACAACGTCCAAGCTGTGCATGATCAAACGGCTGATTTCAAGAACTGGCTCAGCGCGGTTATCTCATACCAGCAGGCGTGCACGGAGGGTTTCGACGATAGCAAAGACGGTGAGAAGAAGATCAAGGAGCAGTTGCACACAGAGAGCTTGGACCATGTGCAGAAACTCACAGGTATCACCCTTGATATCGTGAGTGGTTTGTCACACATCCTCGAGCAGTTCGGGTTGAAGTTCAACCTTAAACCCGCCTCTCGTCGTCTTCTCAGCAAGGATGGGTACCCCTCTTGGTTCTCTGCCTCAGACCGCAAGCTCTTGGCCCAGCTTCAACGTAAGGGATGGAGATCACACATCACACCCAATGTCGTAGTTGCTCAGGATGGTTCTGGTCAGTTTAAAACCATTGCCGAGGGAATTGCCTCTTATCCCAGCAACTTCCAGGGTAGATATAACATCTATGTTAAGGCTGGTGTCTATGATGAATACATCACCGTTCCCAAGACCGCCGTCAACGTTCTCCTCTACGGTGATGGCCCTGGAAAGACCGTTGTCACCGGTCACAAGAACTTCGTCGATGGTGTCAAGACAATGCAAACTGCCACTTTCGCCAACACTGCTCCGGGCTTTATTGCCAAGGCAATGACATTCCAAAACACAGCTGGAGCTGAGGGACACCAAGCCGTGGCTTTCAGGAACCAGGGAGACATGTCCGCAGTGATTGGTTGCCACATTTTGGGTTACCAAGACACCTTGTACGTCCAAACCAACAGGCAATTCTACCGCAACTGCGTTATCTCCGGCACCGTTGACTTCATCTTCGGCACATCACCCACCGTCATCCAGCACTCCGTCATCGTCGTCAGGAAGCCCCTCGACAACCAGTTCAACACTGTTACCGCCGACGGCACATCCGCCAAGAACATGGACACAGGAATTGTGCTCCAGGACTGCGAGATCGTCCCCGAAGCCGAGCTCTTCCCAGTGAGGTTCCAGATCAAGTCGTACTTGGGCAGGCCATGGAAGCAATACTCAAGGACCGTGGTGATGGAATCAAACATCGGTGACTTCCTTCACCCCGAGGGATGGTGCCCTTGGATCGGTGAACACTTCGAAGACACCTTGTACTACGCTGAGTACAACAACGCTGGACCTGGTGCCGTTGTGGACGGAAGGATCAAGTGGAAGGGTTACCGTGGTCTCATTTCCCGCGAAGAAGCTACTCAATTCACCGCTGGCCAATTCCTCAAGGCTGGACCCAACTCCGGAACCGATTGGTTGAAGGCTCTACATGTTCCTCATGCCCTTGACTTCGTCAAAGCT 1716 0.5216 MSGKIIISAVSLILVVGVAIGVVVTVNKKGDEPAIQTNQKSVGIICQNTDDQKLCHDTLSSVKGLETADPKAYIATAVKATMDSVIKAFNMSDRLTTEHADKDNGIKMALDDCKDLLQSAIQSLQLSTDMVQNNNVQAVHDQTADFKNWLSAVISYQQACTEGFDDSKDGEKKIKEQLHTESLDHVQKLTGITLDIVSGLSHILEQFGLKFNLKPASRRLLSKDGYPSWFSASDRKLLAQLQRKGWRSHITPNVVVAQDGSGQFKTIAEGIASYPSNFQGRYNIYVKAGVYDEYITVPKTAVNVLLYGDGPGKTVVTGHKNFVDGVKTMQTATFANTAPGFIAKAMTFQNTAGAEGHQAVAFRNQGDMSAVIGCHILGYQDTLYVQTNRQFYRNCVISGTVDFIFGTSPTVIQHSVIVVRKPLDNQFNTVTADGTSAKNMDTGIVLQDCEIVPEAELFPVRFQIKSYLGRPWKQYSRTVVMESNIGDFLHPEGWCPWIGEHFEDTLYYAEYNNAGPGAVVDGRIKWKGYRGLISREEATQFTAGQFLKAGPNSGTDWLKALHVPHALDFVKA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00906 572 Pfam Plant invertase/pectin methylesterase inhibitor 45 196 IPR006501 GO:0004857
Lapu6g00906 572 CDD PMEI-like_3 45 201 - -
Lapu6g00906 572 Gene3D - 247 569 IPR012334 -
Lapu6g00906 572 SMART PMEI_2 37 196 IPR006501 GO:0004857
Lapu6g00906 572 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Lapu6g00906 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Lapu6g00906 572 PANTHER PECTINESTERASE 14 559 - -
Lapu6g00906 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 200 IPR035513 -
Lapu6g00906 572 FunFam Pectinesterase 38 201 - -
Lapu6g00906 572 SUPERFAMILY Pectin lyase-like 250 559 IPR011050 -
Lapu6g00906 572 NCBIfam pectinesterase inhibitor domain 14 199 IPR006501 GO:0004857
Lapu6g00906 572 Pfam Pectinesterase 253 548 IPR000070 GO:0030599|GO:0042545
Lapu6g00906 572 FunFam Pectinesterase 247 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00906 Lapu-Chr6 9249056 9250771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00906 5 565 Carbohydrate Esterase AT3G05610 40.246 1.44e-132 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00906 K01051 - gmx:100815015 972.23