Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00898 ATGGATGATTGTTGTGCTGTTTGCGCAGAGCCTTTGGAATGGGTCGCCTATGGACCCTGTTTGCATCGGGAGGTGTGCTCCACATGCGTCGCTCGCCTCCGTTTCATATGCGACGATCGCCTCTGCTGCATCTGCAAGACCGAGTGCAACCTCGTATTCGTCACCAAGGCTCTAGGAGATTATACAAAGATGATTAATGACTTTGCTGCCCTTCCTTCGGAGGTAAGAGAGGGCAAGATTGGATCATATTGGTACCATGAGGATACAAATGCATTTTTTGATGACGTGGACCATTACAAGATGATCAAGGCTATGTGTAGACTTTCGTGCAGTGTATGTGACAAGATGGAGGAGCAACCACAGGATGCTGCTTCTAGGCGGCGAGCTAAGTTTAGGAACATAGGGCAGTTGAAGGGTCATTTATTCCACCGTCACAAGTTGCATATGTGCGGTTTGTGTCTGGAGGGAAGGAAGGTCTTTATATGTGAGCAAAAGCTATATACCAGAGCACAGTTGAATCAACACATAAGCACAGGTGATTCCGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTCATGGGGCATCCAATGTGTGAATTCTGCAGAACCCCATTTTATGGAGACAATGAATTATACATGCATATGTCTAGAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCAGTATGAGTACTTTAAGAATTATGATGACCTAGAGATTCACTTCCGTCAAAAACACTTCTTATGTGAAGATGAGGCTTGTCTTACTAAGAAATTTGTTGTTTTTCAATCTGAAGCGGAGATGAAGAGGCATAATGCTATCGAACATGGAGGACGGATGTCACGGTCAAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTCCGATACAGACATGGCAATGAACAGGAGCAACGCCGTGGAAGAAATCGTACGTTTCGTCGTGATTTTACTGAAAATCAACTTTCCATGGCCATTGAAGCTAGTCTAGAAACAGCCAATGCAGAGCAAACATTTCGGGATCAATCAGTGTCAGGTAGTGGGCGAGTTGCTGTTGATGATGGGAATGACGATATTGATTCTCTCATTCAGCCATTTGAATCATTAGCTGCTGGTGGTTCTGAAGCATCTTCAAGATACCTTCAAGCCTTGGGACATAGCTCAAGGAGTGGACCTCTGGAAGATTCTTCCTTTCCACCACTACCCATAACTTCCAACAATGGACAGCAAAGATCCAAACATGAATTGGAAGGCTCAGCTAATAACTCTATGGCTGCACGTTTGCGTCGTCATAGCAACAGAACTGTAACTGTTGTTAATTCTGGCAATGCATGGCCAGCAGCAGGTCGTGGACTGGCACAACCATCAAGTAATCCTTCACAATTTAGACCGTTGTCAAATAATGCTCTGGGTCTTTTGGGTAATTCTGGGCAGACAAAGAAGACAGTGATTAACAGAGGACTTTCACCATCAACTTATGCTGGTTCTATTCAGACTACACAAAGAACTGCTCATGGACAATTACCTGGTGGTTCATCGAGGGACACGCGTGACAATGTTAGAATAGTCCACTCTGCATCTGCCCCAAATCTCATGGAGAACAACTCTGTTGAAGCTTCAATATCTGATTTTCCTCCTGTTTCTGCTGCCCAAGCGAGCAAGTTAACTGCTAGCAGTCAGTCTTCATTGAATGTGGAAAATGTTCAGTCTGCTAATAAGTCTCTGGTTGAAAAGATTCGAGGTGCTCTTGATTTTGATGAAGAAAAATACGGTATGTTTAAGGACATATCTGCCCAATATCGCCAGGGCACAATAGATACAGGTACGTATCTGGACTATGTGCAGAAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTGGCAAGACTATGCCCTGATACTCAGAAGCAGACAGAGCTTGTTGAGGCTTACAGCGCTAGTTTGCAAAGAGATGCTTTACTGGAAAATAACTTGGTTCGAAGCGGCGCAAGCACCCGCAAAGACAGTAATGTAAACAAGAAAGGCAAAGGTAAGTCTATAGATAGTAGGGGGAGTAACTCCACAGACAAATTAGCAGATAGCTTTTTAAGCACCGTACATCAGCTACAAGCAAATTATAAATCTTCCGAAGAAAAGATGGAAGTTCTATCAAAGGGTGATTACCGAGGTGACAGGGGAAAGTTAAAAATTGAACAGCGGATTGATACTAATTCTGGAAGTCAACCTGGGGTGAAGCTTATTGGGAAGAGTGAAACATCAAATGGCAGTTTATCTACCCAAGTTAGAGAGGATGGTGGTGGTGGGAACAAACAACGCAAGAAAGGTTCAAAGTTCCTGAGAGTGCGACTTGGTGATGGTTCTGCTTTGGCCCTTCTTGATCAATCTGATCCTGGAACAACGGACAGCTCAGAAGTTAACACGGATGAATCTGGAGGAGGGCCACCTGTACGTGGTGTTTGGCGAAATGGGGGAGGTCATAAACTTTTTCCCTAA 2505 0.4435 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRLCCICKTECNLVFVTKALGDYTKMINDFAALPSEVREGKIGSYWYHEDTNAFFDDVDHYKMIKAMCRLSCSVCDKMEEQPQDAASRRRAKFRNIGQLKGHLFHRHKLHMCGLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSREHYTCHICQRQHPGQYEYFKNYDDLEIHFRQKHFLCEDEACLTKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEQEQRRGRNRTFRRDFTENQLSMAIEASLETANAEQTFRDQSVSGSGRVAVDDGNDDIDSLIQPFESLAAGGSEASSRYLQALGHSSRSGPLEDSSFPPLPITSNNGQQRSKHELEGSANNSMAARLRRHSNRTVTVVNSGNAWPAAGRGLAQPSSNPSQFRPLSNNALGLLGNSGQTKKTVINRGLSPSTYAGSIQTTQRTAHGQLPGGSSRDTRDNVRIVHSASAPNLMENNSVEASISDFPPVSAAQASKLTASSQSSLNVENVQSANKSLVEKIRGALDFDEEKYGMFKDISAQYRQGTIDTGTYLDYVQKFGLSHLVLELARLCPDTQKQTELVEAYSASLQRDALLENNLVRSGASTRKDSNVNKKGKGKSIDSRGSNSTDKLADSFLSTVHQLQANYKSSEEKMEVLSKGDYRGDRGKLKIEQRIDTNSGSQPGVKLIGKSETSNGSLSTQVREDGGGGNKQRKKGSKFLRVRLGDGSALALLDQSDPGTTDSSEVNTDESGGGPPVRGVWRNGGGHKLFP* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00898 834 SMART c2h2final6 108 145 IPR013087 -
Lapu6g00898 834 SMART c2h2final6 252 281 IPR013087 -
Lapu6g00898 834 SMART c2h2final6 197 220 IPR013087 -
Lapu6g00898 834 SMART c2h2final6 221 251 IPR013087 -
Lapu6g00898 834 MobiDBLite consensus disorder prediction 797 813 - -
Lapu6g00898 834 CDD RING-HC_ZNF598 3 54 IPR041888 -
Lapu6g00898 834 MobiDBLite consensus disorder prediction 737 769 - -
Lapu6g00898 834 MobiDBLite consensus disorder prediction 663 691 - -
Lapu6g00898 834 MobiDBLite consensus disorder prediction 793 834 - -
Lapu6g00898 834 MobiDBLite consensus disorder prediction 731 780 - -
Lapu6g00898 834 PANTHER ZINC FINGER PROTEIN 598 1 734 IPR044288 GO:0061630|GO:0072344
Lapu6g00898 834 MobiDBLite consensus disorder prediction 342 361 - -
Lapu6g00898 834 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Lapu6g00898 834 MobiDBLite consensus disorder prediction 390 427 - -
Lapu6g00898 834 Coils Coil 703 723 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00898 1 833 C2H2 Transcription Factor Family AT3G62240 51.628 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00898 K22381 - gmx:100780426 1475.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00898 6 9180770 9185904 Lapu6g00898 6 9180770 9185904 ECH