Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00886 ATGGATGATAACATGAAGAAATCACGGTCCACAGAAAAGGTGCAGATCAGTGAAGACACCAGAAAAGGTCCATGGAGCGTTGAAGAGGACACTATTCTCCAAAACTACGTTGCCACCCACGGTGACGGGCGCTGGAATTCCGTCGCACGCTGTGCAGGGCTTAAGAGATCGGGGAAAAGTTGCAGGTTAAGGTGGTTAAACTACTTGCGACCCGATGTTCGTCGCGGAAATATAACACTCCAAGAACAGATAACCATTCTGGACCTTCACTCTCGGTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCCGGTAGAACTGACAACGAAATAAAGAATTATTGGAGGACTCGTGTGATTAAGCAAGCAAGGAATCTGAAGTGTGACGTGGACAGTAAACAGTTCGAAGATGCCTTGCGTTACGTGTGGATGCCCCGTTTGATTGAGCGGATTCAACCATCATCGGAAACTCACGACCCCTCCAAGCTTTACCCGAACCCAACTCCTCCGCGCCATCACCAAAACGGGTTACGCGGTTCGTGTTCAGGTTCCAATGCCTTGGACTCATCAAGTGCCACGTCAGAGAATCCTTTAAGTTTTGAAGATCTGGGTCATAATGCTTCAATTTCGGGCGTGTATGAAAATTTGAATGAGCGAGACTTTGAAGAGGGGAATATCACGCTACCTTTAGGTGGTGGGGACTTAATGGAGAGTTTGTGGGATGATGAGAATATGTGGCTTATGCAACAACTCTGTGATGATCTGGAAATTAAAGACAGTTTTCTTGCGTGA 795 0.473 MDDNMKKSRSTEKVQISEDTRKGPWSVEEDTILQNYVATHGDGRWNSVARCAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDLHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVIKQARNLKCDVDSKQFEDALRYVWMPRLIERIQPSSETHDPSKLYPNPTPPRHHQNGLRGSCSGSNALDSSSATSENPLSFEDLGHNASISGVYENLNERDFEEGNITLPLGGGDLMESLWDDENMWLMQQLCDDLEIKDSFLA* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00886 264 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Lapu6g00886 264 MobiDBLite consensus disorder prediction 1 22 - -
Lapu6g00886 264 CDD SANT 24 69 IPR001005 -
Lapu6g00886 264 MobiDBLite consensus disorder prediction 174 200 - -
Lapu6g00886 264 FunFam Myb transcription factor 22 74 - -
Lapu6g00886 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Lapu6g00886 264 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Lapu6g00886 264 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Lapu6g00886 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Lapu6g00886 264 Gene3D - 23 74 - -
Lapu6g00886 264 MobiDBLite consensus disorder prediction 155 200 - -
Lapu6g00886 264 FunFam MYB transcription factor 79 142 - -
Lapu6g00886 264 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Lapu6g00886 264 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Lapu6g00886 264 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 185 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lapu6g00886 264 SMART sant 74 122 IPR001005 -
Lapu6g00886 264 SMART sant 21 71 IPR001005 -
Lapu6g00886 264 CDD SANT 79 118 IPR001005 -
Lapu6g00886 264 Gene3D - 79 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00886 Lapu-Chr6 9069841 9070906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00886 1 255 MYB Transcription Factor Family AT2G47190 48.519 7.90e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu6g00886 Myb_DNA-binding 7.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00886 K09422 - gmx:100797220 384.8