Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00885 ATGGAGAGGAGTTTATCAGAAAATGGGTCTTCAGGAACGTATGGAAGCAGTGAAGAAGAGATGTCAATAACGAAAGGTCCATGGACAGAGGATGAGGATTCAGTTCTCTTCGATTACATCACAGCTCACGGAGAAGGTCACTGGAACTCTGTCGCTCGTTACACAGGCATGCAAGCATTCATGTGGTCGAAAATAGCTGAACAGTTGCCGGGGAGAACAGACAACGAGATTAAGAACTACTGGAGAACGAGAGTAGTAAAGCAAGCTAAGCAACTGAAATGTGATGTGAACAGTAAACAATTCAGAGACACGTTGCGTTTTGTATGGATGCCGCGTATGCTGGAGCGGATTCAGGCTCAGGCTTCATCATCAGGCCAAGGCCAAACCACCTTAATCTCCAACGTTCAAGCCTACAGCGACCCTTGTGGTGGAGCCACCGCTGCCACCACCAACAATAACCCGGCGGTTGATGTCCACGCGCCCTCTCTCTCTGACTCGGGCGCGTCTTATAGTTTAATGGGTTGTGGAAGTTGGTCATCAAATGGTGCAGAAGAAGGTTATAGCAGCAGCCTCTGGGAAGAGAGAAAGTATGGGTATTCGGAGATTGCAGGAAGTGGTTTTGGTGGTGTTGACTTGTGGACGGACGAGAATATTTGCTTCTTGCAACAGCAGCTCGCTGATGACTTCTGA 690 0.4855 MERSLSENGSSGTYGSSEEEMSITKGPWTEDEDSVLFDYITAHGEGHWNSVARYTGMQAFMWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSSGQGQTTLISNVQAYSDPCGGATAATTNNNPAVDVHAPSLSDSGASYSLMGCGSWSSNGAEEGYSSSLWEERKYGYSEIAGSGFGGVDLWTDENICFLQQQLADDF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00885 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 89 IPR017930 -
Lapu6g00885 229 ProSiteProfiles Myb-like domain profile. 20 85 IPR001005 -
Lapu6g00885 229 MobiDBLite consensus disorder prediction 1 26 - -
Lapu6g00885 229 SUPERFAMILY Homeodomain-like 21 90 IPR009057 -
Lapu6g00885 229 Pfam Myb-like DNA-binding domain 25 83 IPR001005 -
Lapu6g00885 229 CDD SANT 27 83 IPR001005 -
Lapu6g00885 229 SMART sant 24 87 IPR001005 -
Lapu6g00885 229 MobiDBLite consensus disorder prediction 1 23 - -
Lapu6g00885 229 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 58 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lapu6g00885 229 Gene3D - 23 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00885 Lapu-Chr6 9056749 9057796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00885 1 228 MYB Transcription Factor Family AT2G47190 36.101 8.70e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu6g00885 Myb_DNA-binding 5.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00885 K09422 - gmx:100819467 283.878