Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00878 ATGGAGATTCCGAGGGAGCAGATAGAGCACAGGCTCAATTTCAACGGAGACCCTCCAAACCCTCATTCTCACGACAATGGTAATGGCTTCAACCACTTCCAACCCCTCGATTCTGGATACGCTCTTAACCATTCCGTTCCTCGCCCTCTCCGCAAACGCCCCTGGCATCACTCCAACCAAGGAACTTCTCCAGATCGAGTGGACGGTGCATGTAATGTTAAAGTTTATGTTGCTCCTGTTCCTAGAACTGCCACGGAGGCCGAGATCCGTCCTGTATTTGAAGAACATGGAACTATTGTTGAGGTTATTCTTTTAAAAGACAAGAGAACTGGTGCAAGGCAAGGAAGTTGTTTTGTGAAATATGCGACATTTGATGAAGCTGACAGGGCTATTAAGGCTTTAAACAATCAATATACATTTGCTGGGGAATCTTATCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGTCTTGGGGTTCGAGGATTCTGCCGTAACATGGAAAAGAAAGACCCTTTAGAAGTGGTGGCAGATAAATTGGCAGATAAAGTTTTTGTTAGTTGCTTCAACAGAGAGGCTTCAAAAAAGGAAATTGAAGAAATATTTTCCCCTTATGGACATGTAGAAGATATCTTCATTGCGACCAATCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTAGCTGCAATCAAAGGGCTGAATAGAAACTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCGAAGAGACCTAGGACGGGAGAGTCAAGGTGCAACTATTTATCTGTGAATGCAAATTTTGGACCCTGTTCTCAAGAACCAGCAGTATGGCCACTACCAAATTTTGGTGATTCCAATTGTGGAGGAAATATTTTGCCTATTGCCCCACATCACTCCACAATTGCACACCCACAAGTTACTCCTCATATGCAAAACTGGGAACCCGGTGCTACTGTGGTACAACATTCATTCCCCCCCCAACAATTGCATTCACAGTTGGCTTCAATGCCTTTCGGGTCAATTCAAGCTCCAAATTTGCCTTCTCAGCCATTCATTACTGAGGTGCAGAGACAATCACATCCCGGAGATTCATCAGTTCAAACTGTAGAGCAGCAGCTTAGTTCACAGTTGGCTAGTCAGACTGGAAGCAACCCTAGTACAGCTGCTGGCAATACTCCACCTGATATGCCTTCAAGTCCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTATTGCCCCGATGGTGTTAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAGAAGCCTGAAGAGTATGCCTTGAACGAGAAAGAATCTCAGAAGCAGCCAGAGCAGGACGACAATTGCTGCAGTCTCTCACAATTGTCATGTTCCTCTCAACAAGTTGCAGTAAAACAACAGGAAACAAATCATGACCACAGACAGTCAGATACAAGTCCTGTTGTTGGATAG 1500 0.4407 MEIPREQIEHRLNFNGDPPNPHSHDNGNGFNHFQPLDSGYALNHSVPRPLRKRPWHHSNQGTSPDRVDGACNVKVYVAPVPRTATEAEIRPVFEEHGTIVEVILLKDKRTGARQGSCFVKYATFDEADRAIKALNNQYTFAGESYPVVVKFADRELERLGVRGFCRNMEKKDPLEVVADKLADKVFVSCFNREASKKEIEEIFSPYGHVEDIFIATNRGYAFVKFSNREMALAAIKGLNRNFTMRGCDHPLIVRFADPKRPRTGESRCNYLSVNANFGPCSQEPAVWPLPNFGDSNCGGNILPIAPHHSTIAHPQVTPHMQNWEPGATVVQHSFPPQQLHSQLASMPFGSIQAPNLPSQPFITEVQRQSHPGDSSVQTVEQQLSSQLASQTGSNPSTAAGNTPPDMPSSPQDEDFPECDWSEHYCPDGVKYYYNCVTCESRWEKPEEYALNEKESQKQPEQDDNCCSLSQLSCSSQQVAVKQQETNHDHRQSDTSPVVG* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00878 499 Gene3D - 66 159 IPR012677 -
Lapu6g00878 499 ProSitePatterns WW/rsp5/WWP domain signature. 420 445 IPR001202 GO:0005515
Lapu6g00878 499 SUPERFAMILY RNA-binding domain, RBD 182 264 IPR035979 GO:0003676
Lapu6g00878 499 ProSiteProfiles WW/rsp5/WWP domain profile. 420 447 IPR001202 GO:0005515
Lapu6g00878 499 FunFam Flowering time control protein FCA isoform B 58 159 - -
Lapu6g00878 499 Pfam WW domain 418 445 IPR001202 GO:0005515
Lapu6g00878 499 SUPERFAMILY WW domain 419 449 IPR036020 GO:0005515
Lapu6g00878 499 MobiDBLite consensus disorder prediction 477 499 - -
Lapu6g00878 499 SUPERFAMILY RNA-binding domain, RBD 27 152 IPR035979 GO:0003676
Lapu6g00878 499 Gene3D - 403 466 - -
Lapu6g00878 499 MobiDBLite consensus disorder prediction 19 33 - -
Lapu6g00878 499 CDD WW 418 447 IPR001202 GO:0005515
Lapu6g00878 499 Gene3D - 178 265 IPR012677 -
Lapu6g00878 499 SMART ww_5 415 447 IPR001202 GO:0005515
Lapu6g00878 499 SMART rrm1_1 74 150 IPR000504 GO:0003723
Lapu6g00878 499 SMART rrm1_1 184 254 IPR000504 GO:0003723
Lapu6g00878 499 PANTHER RNA BINDING PROTEIN 32 447 - -
Lapu6g00878 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 140 IPR000504 GO:0003723
Lapu6g00878 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 243 IPR000504 GO:0003723
Lapu6g00878 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 258 IPR000504 GO:0003723
Lapu6g00878 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 154 IPR000504 GO:0003723
Lapu6g00878 499 MobiDBLite consensus disorder prediction 365 408 - -
Lapu6g00878 499 MobiDBLite consensus disorder prediction 365 415 - -
Lapu6g00878 499 MobiDBLite consensus disorder prediction 12 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00878 Lapu-Chr6 8996956 9006479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00878 75 288 Eukaryotic Initiation Factors Gene Family AT4G34110 27.928 8.42e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00878 K13207 - gmx:100795107 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00878 6 8996956 9006479 Lapu6g00878 6 8996956 9006479 ECH