Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00877 ATGGATAATAAGGAGATGATGATGATGATGATGGGTTTGAAGAAGAAGAAGGAGGATTGTGCCATAGGGTCTTCGTCCTTCCCTTGTAATTATCCATTCCTTGATTTCTCTGAAGACAAGGGTTCTTTAGGGTTTATGGAGTTGTTGGGTGTGCAAGACTGTAGTCCTCAGTTTGATTTTCCTTTAGGATCCAACATGGCGGTGCCTCAAACCTCTGATCTTAAGGAGCCATCTCAGACTAAGAAAGAGTGCTCCGAGGTAACTAATCAGCAACCTGCGACTCCAAACTCTTCATCCATTTCCTCCGCGTCCAGTGAGGCTCTCAACGATGAGCAACAGAATAGAACTCTAGACCAAACACATGATGAACACCAAAAGACAAAGGAACAGTTGAAGGCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGCTTCGTGTAATGTGAAGAAACGTGTGGAGCGATCTTTTACCGACCCAAGCATTGTGGTGACAACCTACGAAGGCCAACACACTCATCCAAGCCCAGTTATGGGTCGCTCCAACAACTTCGGTTCCCTAATGTCTGGATCTGATAATTACATGTCCCAATTTTATCAGCACCACCATCAACAGCAACTACATGTCAATGCATTGTCTTCTTTGGGTTTCCTCTCTCCAAAGAATGCCACTTTTCATCAAGAGGCTGCGTTGTTGAGTGACTATGGGCGTCTTCAAGATGTTGTTCCTTCACATATCTTCAAACAAGACTAG 876 0.4486 MDNKEMMMMMMGLKKKKEDCAIGSSSFPCNYPFLDFSEDKGSLGFMELLGVQDCSPQFDFPLGSNMAVPQTSDLKEPSQTKKECSEVTNQQPATPNSSSISSASSEALNDEQQNRTLDQTHDEHQKTKEQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSIVVTTYEGQHTHPSPVMGRSNNFGSLMSGSDNYMSQFYQHHHQQQLHVNALSSLGFLSPKNATFHQEAALLSDYGRLQDVVPSHIFKQD* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00877 291 MobiDBLite consensus disorder prediction 62 144 - -
Lapu6g00877 291 Pfam WRKY DNA -binding domain 158 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00877 291 PIRSF WRKY_txn_fact_IIc 1 291 IPR017396 GO:0003700
Lapu6g00877 291 MobiDBLite consensus disorder prediction 83 114 - -
Lapu6g00877 291 Gene3D WRKY domain 141 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g00877 291 ProSiteProfiles WRKY domain profile. 152 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00877 291 MobiDBLite consensus disorder prediction 115 144 - -
Lapu6g00877 291 Coils Coil 114 141 - -
Lapu6g00877 291 SMART WRKY_cls 157 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00877 291 SUPERFAMILY WRKY DNA-binding domain 149 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g00877 291 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 88 245 IPR044810 GO:0003700
Lapu6g00877 291 FunFam WRKY transcription factor 57 143 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00877 Lapu-Chr6 8994786 8996639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00877 27 291 WRKY Transcription Factor Family AT2G47260 44.615 3.18e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu6g00877 WRKY 8.1e-27 CL0274