Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00874 ATGTCGAAGAGAAAGTTCGGATTCGAAGGCTTCGGCATAAACCGCCAATCCACATACAGCTTCGAGCGATCCCAGGCCCCTCAGCGAATCTACGTCCCTCCCTCCTCCCGTCACGGCCACGACAACTACGAGGACACCGACCTCGACAACATTGACTACGACGATAACAACAACGACGAAGGGAACAAGAACAGCAATGATGACGACGAAATCGACCCTCTCGACGCCTTCATGGAGGGGATTCACGAGGAGATGCGGGCGGCGCCGCCGCCCAAGCCGAAGGAGAAGACCGAGGACCGGTACCGGGACGACGACGACGACGATCCTATGGACAGCTTTCTGAAGGCGAAGAAGGATTTAGGGCTGACTCTCGCGTCCGAGGCGCTGCACGCTGGGTACGATTCCGATGAGGAGGTTTATGCTGCTGCCAAAGCCGTGGACGCTGGTATGATTGAGTATGATTCCGACGATAACCCTATTGTTATTGACAAGAAGAAAATTGAGCCCATTCCCGCTCTCGATCACTCTTCCATTGATTACGAACCCTTCAATAAGGATTTTTATGAGGAGACACCTTCAATATCAGGTATGAGTGAGCAGGATGTAACCGAATACCGTAAGAGTTTGGCTATTCGTGTATCTGGTTTTGATGTTCCTAAGCCCATAAAGGCTTTTGAGGACTGTGGGTTTCCGTCTCAGATTATGAATGCTATAAAAAAACAAGGGTATGAGAAACCGACATTCATACAATGTCAGGCTTTGCCTGTTGTGCTTTCTGGCAGGGATATTATTGGTATAGCAAAAACTGGTTCTGGTAAAACAGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAAGAGGGGCCTATAGGGGTTATATGTGCACCTACCAGAGAATTGGCTCATCAGATATATCTGGAGGCCAAGAAATTTGCAAAAGCGTATGGGGTACGCGTATCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAAGCTGGATGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGTTGAAAATGAAGGCATTGACGATGATGAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGGTTTGAACCTCAAGTAAGGTCCATTGTTGGGCAGATTAGGCCAGACCGTCAAACATTACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCTAGGGAAATCCTTACTGATCCTATTAGAGTAACTGTTGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTTGTGTAATTCCTTCTGATACTGAAAAGTTGCCTTGGCTTCTGGAAAAGCTACCTGAAATGATTGATCAAGGTGATACTCTAGTTTTTGCTTCAAAAAAGGCTACTGTGGATGAAATTGAATCACAGTTGGCTCAGAGAGGCTTTAAGGTTGCTGCCTTGCATGGTGATAAAGATCAAGCTTCTAGGATGGATATTTTGCAGAAGTTTAAATCCGGTCTCTACCATGTGCTCATTGCAACTGATGTTGCAGCCCGGGGTCTTGACATCAAGTCAATTAAGTCGGTGGTAAACTTTGATATTGCAAAGGATATGGACATGCATGTTCATCGTATTGGAAGAACAGGTCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACACAGAAAGAAGCACGGTTTGCTGGTGAATTGGTGAATAGCTTGGTTGCTGCTGGTCAGAATGTGTCCGTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCTAGAAAAGGAGGTGGGAAAAAAGGCAGAGGTAGAGGTGGTGGCGGAGGTGGTCGGGGTGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATAATCCTGAGTCGAACAACGCACCATCTAACACAGTTCCTACTCGATCTGCTGCAGTAAATTCTCTGCGGACAGGAATGATGTCACAATTTAGGAATAACTTTGTTGCTGCTTCATCAAACTCTCAGAATCAAGGATTTGGTAACAATACAACCATGGCTGCTAATAAGAGACCGGCACTCCCTGGTTTTGTATCTGGTGGATCAATTGGTGGTGACGTGAATACATATCAGCACACTGTTTCACTTAGTCCTGCTTCGTTAGCGGTAAATTCCAGCACTCAAGGTTCTGGAGTAAATCCTGGTCAGAAGAGCATGACCATGAATAGTTCTAAACCCAAAGAGAGGCGGAGGCCATCAGGTTGGGATAGATAG 2310 0.4619 MSKRKFGFEGFGINRQSTYSFERSQAPQRIYVPPSSRHGHDNYEDTDLDNIDYDDNNNDEGNKNSNDDDEIDPLDAFMEGIHEEMRAAPPPKPKEKTEDRYRDDDDDDPMDSFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETPSISGMSEQDVTEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQGYEKPTFIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVCVIPSDTEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSNTVPTRSAAVNSLRTGMMSQFRNNFVAASSNSQNQGFGNNTTMAANKRPALPGFVSGGSIGGDVNTYQHTVSLSPASLAVNSSTQGSGVNPGQKSMTMNSSKPKERRRPSGWDR* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00874 769 MobiDBLite consensus disorder prediction 733 769 - -
Lapu6g00874 769 SMART ultradead3 242 444 IPR014001 -
Lapu6g00874 769 MobiDBLite consensus disorder prediction 733 754 - -
Lapu6g00874 769 Gene3D - 431 607 IPR027417 -
Lapu6g00874 769 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 223 251 IPR014014 GO:0003724
Lapu6g00874 769 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 454 603 IPR001650 -
Lapu6g00874 769 CDD SF2_C_DEAD 441 573 - -
Lapu6g00874 769 Pfam DEAD/DEAH box helicase 249 418 IPR011545 GO:0003676|GO:0005524
Lapu6g00874 769 MobiDBLite consensus disorder prediction 1 110 - -
Lapu6g00874 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 598 IPR027417 -
Lapu6g00874 769 MobiDBLite consensus disorder prediction 13 31 - -
Lapu6g00874 769 FunFam probable ATP-dependent RNA helicase DDX17 185 432 - -
Lapu6g00874 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 432 IPR027417 -
Lapu6g00874 769 MobiDBLite consensus disorder prediction 755 769 - -
Lapu6g00874 769 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 254 429 IPR014001 -
Lapu6g00874 769 MobiDBLite consensus disorder prediction 56 110 - -
Lapu6g00874 769 SMART helicmild6 482 563 IPR001650 -
Lapu6g00874 769 Gene3D - 186 430 IPR027417 -
Lapu6g00874 769 MobiDBLite consensus disorder prediction 610 634 - -
Lapu6g00874 769 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 375 383 IPR000629 -
Lapu6g00874 769 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 187 603 - -
Lapu6g00874 769 CDD DEADc_DDX42 234 430 - -
Lapu6g00874 769 Pfam Helicase conserved C-terminal domain 458 563 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00874 Lapu-Chr6 8930587 8935115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00874 220 573 Eukaryotic Initiation Factors Gene Family AT3G19760 32.493 4.00e-62 213
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00874 6 8930587 8935115 Lapu6g00874 6 8930587 8935115 ECH