Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00870 ATGGACACTGATACTAATGCCTCACCCCCACCTGACTCAGAAGCATCTTCAGAGCTCAAATCATCAGAAACTCAAACATCAAAGAAAAGGAAAATGGTTGAGAAAACAGTTGTGGCAGTGAGGATTGGAGAGAATGTTGGCAAGCTCAAGAATGAAGGGCTACCTTCGGATTTTTGGTCTTGGAGGAAATATGGACAAAAACCAATCAAAGGGTCTCCATATCCAAGGGGCTATTACAAGTGCAGCACATCCAAAGGTTGTTCGGCCAAAAAGCAAGTTGAGAGGTGCAGAACAGATGCTTCAATGCTCATCATCACATATACCTCTACACATAACCATCCTTGCCCCACCGCCACCGCCACAGCCACAGCCACCATCACCGCAAATTCACCCCAACAACCAAAAGAATCCGAATCCGAAACCACCCAAGACCTCTCAGCTACCTCAAAGGAGGAATACCAAGAACATATAGAAGAAGAACATAGGGATAATAAGGCTCCCAGTGACGAAGGTAGAAATGAAGAAAATTTTCTTTACTTGCAATCTCCAATACTATGCTCCCAAGACATAATAATAGAACAAGAAGACCCATTCAAACTAAACACGGAGAAAAGCCATGAAAGAATAGATCTCCTCTTGGAGGAGGAAGATCCCCTTTGTTATGCACAACTCAAGAATTTGTCTGCTTCCAAAAATGAAGAACTTGATTTTTTCGATGAGCTTGAGGAGTTGCCCATGTCTTCATCTTTCTTGCACTTCACGAGGAGCATTTTTTCCGATGAAAGGATTCCCATTGCCCCTTCTTGA 807 0.4325 MDTDTNASPPPDSEASSELKSSETQTSKKRKMVEKTVVAVRIGENVGKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYKCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPCPTATATATATITANSPQQPKESESETTQDLSATSKEEYQEHIEEEHRDNKAPSDEGRNEENFLYLQSPILCSQDIIIEQEDPFKLNTEKSHERIDLLLEEEDPLCYAQLKNLSASKNEELDFFDELEELPMSSSFLHFTRSIFSDERIPIAPS* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00870 268 FunFam WRKY transcription factor 65 37 116 - -
Lapu6g00870 268 Pfam WRKY DNA -binding domain 57 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00870 268 Gene3D WRKY domain 42 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g00870 268 MobiDBLite consensus disorder prediction 1 33 - -
Lapu6g00870 268 MobiDBLite consensus disorder prediction 1 22 - -
Lapu6g00870 268 MobiDBLite consensus disorder prediction 149 172 - -
Lapu6g00870 268 MobiDBLite consensus disorder prediction 127 172 - -
Lapu6g00870 268 ProSiteProfiles WRKY domain profile. 50 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00870 268 SUPERFAMILY WRKY DNA-binding domain 53 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu6g00870 268 SMART WRKY_cls 55 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu6g00870 268 MobiDBLite consensus disorder prediction 127 148 - -
Lapu6g00870 268 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 10 249 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00870 Lapu-Chr6 8896083 8897918 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00870 15 250 WRKY Transcription Factor Family AT4G01250 37.712 4.96e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu6g00870 WRKY 4.5e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00870 6 8896083 8897918 Lapu6g00870 6 8896083 8897918 ECH