Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00858 ATGGCAGAGGTTGTTTTGCTAGTCGATGATTTGAAACTGCTTTCTGGGATTCCTCGCTGTAGAATTTGTCACGAAGAGGAGTTTGAAAGCGTAGAAACATTGGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCCACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATTCAGCTCCACCCAAGAAGTCTAAGATAAATGATGAAGCAATGTCCATTAGGGAGGAAGAAGAAGAGTCAAACGGAAGAATGGAGATAAGGGTTGAAGGAGTTGCAATGGAAAGCGATTACTCTGAATGCAGTTCAGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCTTTTACACTTGTCTTACTTGTAAGACATTTTTTCGCAGTGCTTTCAAATGGAACGCAAGATTACCCGTTTACTCTACTTACTGTAATTATATTAAAGGCTAGCGGAATTATTATACCTATGTACATAATTATTAAGATTATTGGAGGCATTCAGAATTGTACTCAGCACTATGAGGATTATAACGATGACACATCAATGTCTGAAGATGAGATACAGCATAGTGTAAATTTAAGACATTCATAG 648 0.3966 MAEVVLLVDDLKLLSGIPRCRICHEEEFESVETLEAPCACSGTVKFAHRDCIQRWCHEKGNTTCEICLQQYEPGYSAPPKKSKINDEAMSIREEEEESNGRMEIRVEGVAMESDYSECSSAADRSASCCRSLAIAFTLVLLVRHFFAVLSNGTQDYPFTLLTVIILKASGIIIPMYIIIKIIGGIQNCTQHYEDYNDDTSMSEDEIQHSVNLRHS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00858 215 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Lapu6g00858 215 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Lapu6g00858 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Lapu6g00858 215 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Lapu6g00858 215 CDD RING_CH-C4HC3_MARCH 20 67 - -
Lapu6g00858 215 SUPERFAMILY RING/U-box 18 72 - -
Lapu6g00858 215 Pfam Protein of unknown function (DUF3675) 73 182 IPR022143 -
Lapu6g00858 215 SMART ringv_2 19 68 IPR011016 GO:0008270
Lapu6g00858 215 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Lapu6g00858 215 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 191 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00858 Lapu-Chr6 8782798 8785137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00858 20 108 C3H Transcription Factor Family AT2G37950 34.444 9.37e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00858 - - gmx:100802379 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00858 6 8782798 8785137 Lapu6g00858 6 8782798 8785137 ECH
Lapu6g00858 6 8782798 8785137 Lapu7g00562 7 6373348 6375863 PCT