Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00849 AATGCATTGATAGAGAAAAGAAACATGTCTGATAATCAGAAGACTCAGAGTTCGGCACCCAAGCTATTCGGTTTCCCACTAACAGAGCAAGAGGAATTTGCAGAAAGGAAATACGATGTTGGAGAGGACAGAAAATTCAGGTGTCACTACTGCAAGCGAGTTTTCGCAAACTCCCAGGCCTTAGGGGGCCACCAAAACGCTCACAAGAAAGAGCGTCAGAGAGCCAGGCGATTCCAAATCCACAACCACCCACGCTCCTCCATCCCACCATCATCTGTTACCTTTCTCACCACACATGCCATAATACGATCTCTGCCCTCCATCTACCTTCCATCTCCTTCTCCTTCTACCACCGCAAAGCACTTCCCTTCACGCCCCCTTTTCATTCCTTCCTCCACCCACCACCCTCCTCCTCCTCCTACAACCACTACCCCATGTTTTCCTTTTCACCTTTATGCCTCACCCACTGTACTGCAATCTGCTTCTGCTGTCCTTGATTTTTCTGCAGACAGGGAAGTTGATGTCCATCTCAAATTGTAG 540 0.4852 NALIEKRNMSDNQKTQSSAPKLFGFPLTEQEEFAERKYDVGEDRKFRCHYCKRVFANSQALGGHQNAHKKERQRARRFQIHNHPRSSIPPSSVTFLTTHAIIRSLPSIYLPSPSPSTTAKHFPSRPLFIPSSTHHPPPPPTTTTPCFPFHLYASPTVLQSASAVLDFSADREVDVHLKL* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00849 179 FunFam Zinc finger protein 6 34 102 - -
Lapu6g00849 179 MobiDBLite consensus disorder prediction 1 20 - -
Lapu6g00849 179 MobiDBLite consensus disorder prediction 116 142 - -
Lapu6g00849 179 PANTHER ZINC FINGER PROTEIN 5 10 179 IPR044299 GO:0010090
Lapu6g00849 179 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Lapu6g00849 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Lapu6g00849 179 Gene3D Classic Zinc Finger 29 91 - -
Lapu6g00849 179 Pfam C2H2-type zinc finger 46 71 - -
Lapu6g00849 179 SUPERFAMILY beta-beta-alpha zinc fingers 43 73 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00849 Lapu-Chr6 8705362 8708155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00849 15 80 C2H2 Transcription Factor Family AT1G67030 53.425 1.46e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu6g00849 zf-C2H2_6 2.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00849 - - gmx:100806818 201.445