Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00844 ATGGCGACGAGAAATCGAACTGTAGAGTTTAGGAAGCACAGAGACGCCGTGAAGAGCGTGCGTGCTCCTCTCTCCTCCTCCGCATCTGCTTCTTCCACTGGTCCTGTCATTGAAATGGTTTCGCTTCTTCCTTCCAATCGATCATCCTATGCTCCTTTAAGCACCGAGGAGCCATCCACCTCTAGTGTTAGGGACGCGTTTACTGTGGGGTTGCCACCGTCTTGGGTGGATGATTCTGAAGAAATAGCTACAACTATACAACGTGCTCGGGTTAAAATTTCTGAGTTAACTAAAGCTCATTCGAAGGCTTTGATGCCTTCCTTTGCGGATGGCAAAGAGGATCAGCGTCTTATTGAGACTCTCACCCAGGAAATTACATCTCTTCTTAGGAAGTCTGAGGTGAGGCTAAAAAGACTTTCTGCTGCTAGCGGATCTTCTGAGGATTCTAATGTTAGAAAAAATGTACAGCGTTCCCTTGCTATAGACCTTCAGAACCTATCAATGGATCTTCGGCGAAAGCAGTCAGCATATTTGAAACGTCTGCAACAGCAAAAAGAGGGTTATGATGGGATTGACTTGGAGATGAACTTTAACGGGAGTAAATTTGAATCGCAGGATGATGAATTCAGTGATGTGGGTTTTAGTGAAGAGCAAATGACAAAGCTAAAGAAAAGTGAGCAATTCTCAGAGGAAAGGGAAAGAGAGATTGAACAGGTTGTTAAATCAGTCCATGAACTTGCTCAAATCATGAAGGATCTCTCTGTCCTAGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTTCTACGTCCGTTGAAGAGGGCCTTAAGCAGTTGCAAAAGGCAGAGAGAACGCAGAAAAAAGGAGGGATGATTATGTGTGCAACATCGCTTGTTATAATGTGCTTTATCATGCTAGTTCTCTTGATACTCAAAGAGGTTCTCTTCTAG 969 0.4376 MATRNRTVEFRKHRDAVKSVRAPLSSSASASSTGPVIEMVSLLPSNRSSYAPLSTEEPSTSSVRDAFTVGLPPSWVDDSEEIATTIQRARVKISELTKAHSKALMPSFADGKEDQRLIETLTQEITSLLRKSEVRLKRLSAASGSSEDSNVRKNVQRSLAIDLQNLSMDLRRKQSAYLKRLQQQKEGYDGIDLEMNFNGSKFESQDDEFSDVGFSEEQMTKLKKSEQFSEEREREIEQVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKQLQKAERTQKKGGMIMCATSLVIMCFIMLVLLILKEVLF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00844 322 SMART tSNARE_6 221 288 IPR000727 -
Lapu6g00844 322 SUPERFAMILY t-snare proteins 71 281 IPR010989 GO:0016020|GO:0016192
Lapu6g00844 322 CDD SNARE_syntaxin16 230 287 - -
Lapu6g00844 322 FunFam Syntaxin-43 72 280 - -
Lapu6g00844 322 Pfam SNARE domain 262 314 IPR000727 -
Lapu6g00844 322 SMART SynN_4 66 182 IPR006011 GO:0016020
Lapu6g00844 322 ProSitePatterns Syntaxin / epimorphin family signature. 232 271 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lapu6g00844 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 226 288 IPR000727 -
Lapu6g00844 322 Gene3D - 72 280 - -
Lapu6g00844 322 PANTHER SYNTAXIN 77 309 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00844 Lapu-Chr6 8663690 8668836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00844 1 311 SNARE and Associated Proteins AT3G05710 68.615 9.65e-156 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00844 K08489 - gmx:100803629 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00844 6 8663690 8668836 Lapu6g00844 6 8663690 8668836 ECH
Lapu6g00844 6 8663690 8668836 Lapu7g00417 7 4865819 4872492 ECH