Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00831 ATGTACAACCCCATCAGTAGAAAAACCCCACCCATGATACCTCACATACCCTCCATTCGATGTTCTGTTTATGTTCTACTCCTTTTATCAGTAACCCAATTCAGCATCACGACAGAAGCAACAAGAACCCTCCAACAAACTCACCTCCATTTCCATGTAGCAAACTCCACATGCGAGGGAACACTCTACCCCGACCTCTGCGTCTCAACCCTCACCTCTTTCCCAGATCTCACCTCAAAAACCGTCCCACAAATGATATGTTCTGTCGTCAACCACACCATATACGAGGTCACATTGTCCTCCTCCAACTGCACTGGTCTCCGAAAGAAGCTCCCGGGTCTCAACAAACTCGAACAGCGAGCTCTCGACGACTGCCTCGACCTCTTCGATGAAACCGTGGAGGAGCTCAAAACCACCGTCGCGGATCTCTCCCAAAGCACAATAGGGTCGAAGCGTTACCACGATTCCCAGACCCTCTTAAGCGGCGCCATGACCAACTTGTACACGTGTCTTGATGGCTTTGCTTACAGCAAAGGCCACGTGAGGGAGAGGATTGAGGAGGGGCTGTTGGAGATTTCGCATCTCGTGAGTAACTCGCTGGCCATGCTGAAGAAAGTGCCCCAGAAGAAGAAACAGTCAAAGAATGAGGTCTTTCCCGGATATGGAAAGATGAAAGACGGGTTCCCGTCGTGGGTTTCCGCTAATGACCGGAAGTTGCTTCAAGCTGCAGTGAATGAAACGAAGTTCGACCTTGTTGTGGCCAAAGATGGCAGTGGCAACTTTACCACTATAGGTGAAGCAGTGGGTGCAGCACCAAACTCCAGCGCAACTAGATTTGTGATACACATAAAAGCGGGGGCGTACTTAGAGAACGTGGAAGTAATAAGGAAGAAGACCAATCTGATGTGGGTGGGAGATGGAATTGGAAAGACTGTTGTGAAAGCTAGCAGGAACGTCGTAGATGGCTGGACCACTTTCCAATCTGCCACTGTCGCTGTGGTTGGAGACGGATTCATAGCAAAGGGTATAACCTTTGAGAACTCAGCTGGGCCAAGCAAACACCAAGCTGTGGCTCTAAGAAGCGGTGCTGACTTCTCAGCCTTCTACCAGTGCAGCTTTGTTGCCTACCAAGACACGCTCTATGTCCACTCTCTGCGTCAATTCTACCGCGAATGCGACGTTTACGGCACCGTCGACTTCATCTTTGGCAATGCAGCAGCGGTGCTCCAGAACTGCAACTTGTACGCGCGCAAGCCTAATCCAAACCAGAAGAACCTGTTCACAGCACAAGGCAGAGAAGACCCTAACCAAAATACCGGCATTTCCATCATCAACTGCAAGGTTGCAGCAGCTGCTGATTTGATCCCTGTCAAATCTGAGTTCAAGAATTACTTGGGTCGTCCCTGGAAGAAGTATTCCAGGACTGTTTATCTCAATTCTTTGATGGAGGATCTGATAGACCCTGCAGGGTGGTTGGAATGGGATGGCACGTTTGCATTGGATACTTTGTATTATGGAGAGTACAACAACAGAGGTCCCGGTGCAAATACAAGTGGCAGAGTTACGTGGCCTGGTTATAGGGTCATCACGAACTCCACTGAGGCAAGCCAGTTCACAGTTGAAAATTTCATTCAAGGCAATGAATGGTTGAACTCTGCTGGCATTCCATTCTTCTCTGGTTTGAGTTGA 1689 0.492 MYNPISRKTPPMIPHIPSIRCSVYVLLLLSVTQFSITTEATRTLQQTHLHFHVANSTCEGTLYPDLCVSTLTSFPDLTSKTVPQMICSVVNHTIYEVTLSSSNCTGLRKKLPGLNKLEQRALDDCLDLFDETVEELKTTVADLSQSTIGSKRYHDSQTLLSGAMTNLYTCLDGFAYSKGHVRERIEEGLLEISHLVSNSLAMLKKVPQKKKQSKNEVFPGYGKMKDGFPSWVSANDRKLLQAAVNETKFDLVVAKDGSGNFTTIGEAVGAAPNSSATRFVIHIKAGAYLENVEVIRKKTNLMWVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDGFIAKGITFENSAGPSKHQAVALRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAAVLQNCNLYARKPNPNQKNLFTAQGREDPNQNTGISIINCKVAAAADLIPVKSEFKNYLGRPWKKYSRTVYLNSLMEDLIDPAGWLEWDGTFALDTLYYGEYNNRGPGANTSGRVTWPGYRVITNSTEASQFTVENFIQGNEWLNSAGIPFFSGLS* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00831 562 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Lapu6g00831 562 Gene3D - 244 561 IPR012334 -
Lapu6g00831 562 SMART PMEI_2 49 202 IPR006501 GO:0004857
Lapu6g00831 562 SUPERFAMILY Pectin lyase-like 248 560 IPR011050 -
Lapu6g00831 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 207 IPR035513 -
Lapu6g00831 562 CDD PMEI-like_3 56 207 - -
Lapu6g00831 562 Pfam Plant invertase/pectin methylesterase inhibitor 55 202 IPR006501 GO:0004857
Lapu6g00831 562 NCBIfam pectinesterase inhibitor domain 25 205 IPR006501 GO:0004857
Lapu6g00831 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 206 IPR035513 -
Lapu6g00831 562 FunFam Pectinesterase 244 561 - -
Lapu6g00831 562 Pfam Pectinesterase 250 547 IPR000070 GO:0030599|GO:0042545
Lapu6g00831 562 PANTHER PECTINESTERASE 32 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00831 Lapu-Chr6 8541713 8546038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00831 79 561 Carbohydrate Esterase AT4G02300 56.301 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00831 K01051 - gmx:100813592 974.926