Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00830 ATGGCTTTTAAGAACTTGTCCCTTCTTATGCTCTGTCTTTCCCTTGTGTTATCCTTCTTCTCACCGATTTCCATAGCTTCTAACAATAAACTTGTTGTTGTTCCACCAGAAACCATTTGCAATTCCACCGTAGATCCTTCCTACTGCAAAATTGTGCTTGCTAATCAAAATGGCACCATCTTTGACTACGGTCGTATTTCTATCCGAAAGTCCTTGTCCCGGTCACGCAAATTCTTAAACTTAGTAAACTCATTCCTCCAAGACGGATCCTCTTTGTCTCTACCCACCATTCGAGCCCTTGAAGACTGTCAATTCCTCGCTGAACAAAACTTCGAATACTTATCAAACGCACTCGACACTGTCGATAAAGCTAGCGATGATCTTCCCACCACTCAAGCTGAAGACCAGCAAACCATGCTTAGTGCTGCTTTGACAAACCAAGAAACTTGTTTAGAAGGCTTACAGACCACAGCTTCTGATCAAAGAGTGAAGAATGATCTTTCCTCATCACTCTCTGATGACACGAAACTTCACAGTGTTTCCCTTGACCTGTTCACCAAAGGTTGGGTGCCTGAGAAGAAAATCTCAACATCATGGCAACCTAATGGGAGACACTTGGGTTTCCGCAATGGTCGTTTACCATTGAAGATGTCTAGCCGTGTACGAGCCATCTATGATTCTGCTAGAGGTCACGGCAGAAAACTACTTCAAGATAGCAGCGAGAGTGTATTGGTCAATGATATTGTGGTTGTTAGTCAGGATGGAAGCGGGAACTTCACTACCATCAACGATGCTATAGCAGCTGCACCAAATAACACAGCTGCAAATAGTGGTTACTTTTTAATTTTTGTCACTGAAGGTGTGTATCAAGAGTATGTATCCATAGCCAAAAACAAAAAGTACTTGATGATGGTTGGTGATGGGATCAATCAAACCATTATCACCGGTGATCACAATGTTGTCGATAACTTCACAACATTCAACTCAGCAACATTTGCTGTGGTAGCACAAGGGTTCGTAGCTGTTAACATGACATTCCGAAACACTGCTGGGCCAAGCAAACACCAAGCAGTTGCAGTGAGAAACGGAGCTGATTTGTCGACTTTTTACAACTGCAGCTTTGAGGGGTATCAAGACACCTTGTACACGCATTCTCTTAGACAGTTTTACCGTGAATGTGACATCTATGGTACCGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTCCAAACATGTAACCTGTATCCACGCCTTCCCTTGAGTGGACAATTCAATGCAATAACTGCACAAGGTAGAACAGACCCAAATCAAAACACAGGCACTTCCATTCAGAACGCAACCATAAAAGCTACTGATGATTTGGCTCCCGTGGTTGGTACCGTGAAAACATATCTTGGGAGACCATGGAAAGAGTACTCAAGGACGGTTTATATGCAGTCTTTCATGGATAGTTTGATAGATCCTGCTGGGTGGCATGAATGGAGTGGAGATTTTGCCCTAACCACATTGTACTATGCAGAGTACAACAACACAGGACCTGGTTCAAGCACCGAAAACCGAGTAACATGGTCTGGTTATCATGTTATCAATGCTACCGATGCGGTTAACTTTACTGTGTCTAACTTCTTGGCCGGAGATAGTTGGCTGCCTCAAACTGGCGTTCCATATAGTAGTGGATTGATATAG 1689 0.4316 MAFKNLSLLMLCLSLVLSFFSPISIASNNKLVVVPPETICNSTVDPSYCKIVLANQNGTIFDYGRISIRKSLSRSRKFLNLVNSFLQDGSSLSLPTIRALEDCQFLAEQNFEYLSNALDTVDKASDDLPTTQAEDQQTMLSAALTNQETCLEGLQTTASDQRVKNDLSSSLSDDTKLHSVSLDLFTKGWVPEKKISTSWQPNGRHLGFRNGRLPLKMSSRVRAIYDSARGHGRKLLQDSSESVLVNDIVVVSQDGSGNFTTINDAIAAAPNNTAANSGYFLIFVTEGVYQEYVSIAKNKKYLMMVGDGINQTIITGDHNVVDNFTTFNSATFAVVAQGFVAVNMTFRNTAGPSKHQAVAVRNGADLSTFYNCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQTCNLYPRLPLSGQFNAITAQGRTDPNQNTGTSIQNATIKATDDLAPVVGTVKTYLGRPWKEYSRTVYMQSFMDSLIDPAGWHEWSGDFALTTLYYAEYNNTGPGSSTENRVTWSGYHVINATDAVNFTVSNFLAGDSWLPQTGVPYSSGLI* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00830 562 PANTHER PECTINESTERASE 28 551 - -
Lapu6g00830 562 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Lapu6g00830 562 Gene3D - 243 561 IPR012334 -
Lapu6g00830 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 187 IPR035513 -
Lapu6g00830 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
Lapu6g00830 562 Pfam Pectinesterase 249 547 IPR000070 GO:0030599|GO:0042545
Lapu6g00830 562 CDD PMEI-like_3 38 189 - -
Lapu6g00830 562 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
Lapu6g00830 562 FunFam Pectinesterase 37 187 - -
Lapu6g00830 562 SMART PMEI_2 31 184 IPR006501 GO:0004857
Lapu6g00830 562 FunFam Pectinesterase 242 561 - -
Lapu6g00830 562 SUPERFAMILY Pectin lyase-like 246 560 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00830 Lapu-Chr6 8526089 8527946 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00830 15 562 Carbohydrate Esterase AT1G02810 60.627 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00830 K01051 - gmx:100786124 954.125