Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00828 ATGGCTTCCAAGCTTTCTTATTCACTCTCAATATTTCTCTTTCTCGTACCTTTATTTGCCTCAATAATAGCTTCTGCAGACACCGTTTCAAATCCTACAACACCTGTCTCCCCTGGAACCGCATGCAAATCCACCCCAGACCCATCCTATTGCAAATCCGTTCTCCCTCCCCAAAACGGCAACGTTTACGACTATGGCCGCTTCTCCGTCAAAAAATCACTATCACAGGCTCGAAAGTTCTTGAGCCTGGTTGATAAATACCTCCATCGTCGTTCTTCTCTTTCCGCCGCCGCAACCCGTGCACTTGAAGATTGTCGTACTCTCGGGGAACTCAACTTCGATTTCCTTTCTAGTTCCTTCCAAACCGTGAACAAGACAACCAGGTTTCTCCCCAGTTTTCAAGCCGACGACATCCAAACCTTACTCAGTGCCATTCTGACCAACCAGCAAACATGCTTGGACGGTCTCAAAGACACTGCTTCCGCTTGGAGCGTGAGAAACGGTCTCATACTCCCTCTTTCCAACGACACCAAACTCTACAGTGTCTCACTCGCTCTCTTCACCAAGGGTTGGGTTCCCAGAACCAAAGCCAACGCAATGCACCCTACCAAGAAACAACAAGGGTTCCAAAACGGGCGTTTGCCGCTTAAGATGTCGAGCAGAACCCGTGCGATCTACGAGTCTGTGAGTAGGAGGAAGCTCCTTCAGGCCTCAGTGGGTGAGGATGTTGTCGTGAGAGATATTGTGACGGTGAGCCAAGATGGAAGCGGGAACTTCACCACCATCAATGATGCCATTGCTGCAGCTCCTAACAAATCGGTCTCCACAGATGGATACTTCCTTATCTATGTCACTGCTGGTGTGTATGACGAAAATGTGTCCATTGATAAGAAGAAGACCTACTTGATGATGGTCGGGGATGGTATCAACAAGACAATTATCACTGGCAATCGTAGTGTCGTTGATGGCTGGACAACCTTCAGCTCCGCTACATTAGCTGTGGTAGGGCAAGGATTCGTGGGTGTGAACATGACCATCCGCAACACCGCGGGAGCCGTGAAGCACCAAGCAGTGGCGGTTCGAAACGGAGCAGATTTGTCCACATTTTACAGTTGCAGCTTCGAGGGGTACCAAGACACATTGTACGTTCATTCCCTGAGACAATTCTACAGGGAATGCGACATCTACGGCACCGTAGATTTCATATTCGGAAACGCTAAGGTGGTGTTCCAAAGTTGCAACATGTATCCTCGTCTCCCCATGAAGGGTCAATTCAACGCCATCACCGCACAAGGAAGAACAGATCCAAACCAGGACACTGGAATTTCTATCCACAACTGTAGCATTAGAGCAGCTGATGATTTAGCTTCTAGCAACGGTGTTGCAACATATTTGGGAAGGCCATGGAAGGAGTATTCCAGAACGGTTTATATGCAAACTTTTATGGATGATTTGATCAACGGTGCAGGGTGGCGTGAATGGGACGGTGATTTTGCATTAAGCACTTTGTATTACGCAGAGTATAGCAACAGTGGTCCAGGGTCCAACACCACCAATAGAGTGACATGGTCTGGTTATCACGTGATTAATGCCACTGATGCAGCTAACTTTACAGTGTCCAATTTTTTGCTTGGTGATGACTGGTTACCCCAGACAGGAGTGTCTTACACCAATAACTTGATTTAG 1686 0.4781 MASKLSYSLSIFLFLVPLFASIIASADTVSNPTTPVSPGTACKSTPDPSYCKSVLPPQNGNVYDYGRFSVKKSLSQARKFLSLVDKYLHRRSSLSAAATRALEDCRTLGELNFDFLSSSFQTVNKTTRFLPSFQADDIQTLLSAILTNQQTCLDGLKDTASAWSVRNGLILPLSNDTKLYSVSLALFTKGWVPRTKANAMHPTKKQQGFQNGRLPLKMSSRTRAIYESVSRRKLLQASVGEDVVVRDIVTVSQDGSGNFTTINDAIAAAPNKSVSTDGYFLIYVTAGVYDENVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFSSATLAVVGQGFVGVNMTIRNTAGAVKHQAVAVRNGADLSTFYSCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAKVVFQSCNMYPRLPMKGQFNAITAQGRTDPNQDTGISIHNCSIRAADDLASSNGVATYLGRPWKEYSRTVYMQTFMDDLINGAGWREWDGDFALSTLYYAEYSNSGPGSNTTNRVTWSGYHVINATDAANFTVSNFLLGDDWLPQTGVSYTNNLI* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00828 561 FunFam Pectinesterase 39 189 - -
Lapu6g00828 561 PANTHER PECTINESTERASE 23 550 - -
Lapu6g00828 561 FunFam Pectinesterase 242 560 - -
Lapu6g00828 561 CDD PMEI-like_3 40 191 - -
Lapu6g00828 561 NCBIfam pectinesterase inhibitor domain 8 186 IPR006501 GO:0004857
Lapu6g00828 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 189 IPR035513 -
Lapu6g00828 561 Gene3D - 243 560 IPR012334 -
Lapu6g00828 561 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Lapu6g00828 561 Pfam Plant invertase/pectin methylesterase inhibitor 40 186 IPR006501 GO:0004857
Lapu6g00828 561 Pfam Pectinesterase 249 546 IPR000070 GO:0030599|GO:0042545
Lapu6g00828 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
Lapu6g00828 561 SMART PMEI_2 33 186 IPR006501 GO:0004857
Lapu6g00828 561 SUPERFAMILY Pectin lyase-like 246 557 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00828 Lapu-Chr6 8511845 8513778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00828 9 561 Carbohydrate Esterase AT4G02330 63.826 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00828 K01051 - gmx:100800971 1030.01