Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00824 ATGATAATTAAGCGAAGCATGAAAACTGCTGTTCCTAAGCAGAAACGGATCAAGTCAGAAAAAAGCGGAAATTCGACAATTCAGAAGAAGCTGGTAATAGATGAGGTTTATTCTGCTGAAAGAGTCTATGGATCCAGTGAGGCACCTTCCAATTCAAATTCCATGGACTCCAATGGCACAATTCGAGACTTGTCCCCTCAATCAGAAGAAGGGGTTCTTGCCATTCAACCCCAATCTTCCAGAGGTCGCGCCAAGAAGCTTCCTTGCAGGTTCAATGATTCTGTTCTTTACCAACTGTTTGGGTCTGAAAATGAGAATAGAAATCCTTTGCAAGAAGTTGTTGCTATGAGTAGTGGACGAGGTTTTCCATGTTCTGCTGAACTAAGAGATCCTGGATACTCTGTTAAGACGGTTAAAAGGACAGTTAACGGGGGTCGTTCATTGTTTCTTACAGAAAAGAGTAATGATGTGTCTGGGCTTAGTTCCGATGTTGAATGTTTGAACCGAAGTGGTGGCAAACGGAAGAGGGCCGTTCACAGATTGGAAGATTTTTGTGTGGGTGATATAGTTTGGGCAAAATGTGGGAAAACCCATCCTGCTTGGCCTGCTGTAGTCATTGATCCTTTCTTTCGAGCTCCCCAATCCGTCATAAGCTGTTGTGTCCCTTCTTCACTTTGTGTTATGTTTTTTGGTTACTCCAAAAATGGGAAGCGAAGGGACTACGCGTGGGTGAAGCAGGGGATGATATTCCCCTTCTGGGAATTCATGGACAGATTCCAGGAGCAGATCAGATTGTACAAAAGTAAAGTAAGTGACTTCCACAAGGCAATGGAGGAGGCAATGTTGGCCGAAGATGGCATTTTAGACTTACACTTGGATGCTGAGCAAAATATGGTGGGTGGAGATTCCCGTGTTGACCACCGTTATTCCTATCAAAACCAGGGTACACTATCTTGTGCTGGCTGTGGTTTGATGTTGCCATGCAAAACCATGAAGATTAAGGATTCAAGTTGTGCTCCTCACCACTATTGCAAGCCCTGTGCAAAGTTAATAAAATCGAAGCAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGAAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACCAAATTTCCTGTGAACTTTTCAAGGATCTGGAAAATATGGATTATTATTGCCCCGATTGCAAGGGAAAATTCAATTGTAAATTATCAACATCACATGCCCACAATTTTCGAGATAGATCAATGGGGAATAGCCAAAAACTTGTATTACCTGAAAATCTTGCGGTGGTATGCAATGGCATGGAAGGAATCTATATTCCCAAGCTTCATTTGGTTATGTGCAATTGCGGCTTGTGTGGTTCAAGGAAGCATACACTTACTGAATGGGAAAGACATGCAGGTTGCAAAGCCAAAAAATGGAAACATAGCGTGAAAGTAGAAAGCACGATGCAACCGCTAATAAAATGGATCACTGAACACAATGTCCCAGCTGGAATTCCCCCGCAATTAGATCAGCAACAAATTCTCTCCTTTTTGCAAGAGAAGTACGAGCCAGTTTATGCAAAATGGACTACAGAAAGATGTGCCATTTGCAGATGGGTCGAAGATTGGGAATATAATAAAATTATCATCTGTAACAGGTGCCAAATGGCTGTCCACCAAGAATGCTACGGGGCAAAGAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTTTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGTGGGGCTCTAAAGCCAACTGATGTTGAGATGTTGTGGGTTCACGTTACATGCGCTTGGTTTCAGCCTGAAGTCCTTTTCCAAAATCACGAGGCAATGGAACCGGCCACTGGAATCCTTAAGATTGCTCGTAATTCCTTTTCGAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTATAAGTTGTTGCAAATGTGCTACACATTTTCATGTGACGTGCGCGTCAAGAATGGGATATATCATGGAATTGCATTCGACAGAAAAAAATGGGACTACAACAACGAAGACGCTAATATATTGTGCAACTCACAGGGTCCCAAACCCAGATTCAGGACTGGTTGTACATACACCCATGGAGGTATTCTCACCGACAATTTCGCTTCAAAATCACCCGAGGTGCTTCAGGGGATCAAGTCTGGCTTCATCAAAGAATGTAGAACTTCTTGAACCTTCCAAGTCTGAAATTCATGAGATTGATCCACTTTCTGCTGCCCGCAATCGTGTGTACAGAAGGTCTTCCAATAAGAAAAATGTTGAGCCTACAATTCACTTGCTTGGTGGGCCAAAGATTCATTCTTTAAGAGAAATAACTCAAATGAATGGCATTAAGAATGCTCAACCTCGAGAATTTTCTTCTCTTAAGGAACGTCTTCAGCATTTACGGAAGACAGAAAACCATAGAGTTTGCTTAGGAAAATCAGGAATTCATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGGTACGGCGTAGTATTGCTGACCTAAGGGAAGCAAAATATCGTTCAGAAGGCAAAGATTGTTACTTGTTCAAGATTAGTGATGAAGTGATGATTGACGCCACGGATAAGGGCAATATTGCACGTATAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGAGTGGTGAGGAGAATCGGATTGTTCTTATTGCGAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATAATTACTTGTTCGATGTAGATGAGCCAGATGAACTGAAGGTTCCATGTCTCTGTAAAGCCCCTAATTGTAGGGAATTTATGAACTAG 2916 0.4246 MIIKRSMKTAVPKQKRIKSEKSGNSTIQKKLVIDEVYSAERVYGSSEAPSNSNSMDSNGTIRDLSPQSEEGVLAIQPQSSRGRAKKLPCRFNDSVLYQLFGSENENRNPLQEVVAMSSGRGFPCSAELRDPGYSVKTVKRTVNGGRSLFLTEKSNDVSGLSSDVECLNRSGGKRKRAVHRLEDFCVGDIVWAKCGKTHPAWPAVVIDPFFRAPQSVISCCVPSSLCVMFFGYSKNGKRRDYAWVKQGMIFPFWEFMDRFQEQIRLYKSKVSDFHKAMEEAMLAEDGILDLHLDAEQNMVGGDSRVDHRYSYQNQGTLSCAGCGLMLPCKTMKIKDSSCAPHHYCKPCAKLIKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDQISCELFKDLENMDYYCPDCKGKFNCKLSTSHAHNFRDRSMGNSQKLVLPENLAVVCNGMEGIYIPKLHLVMCNCGLCGSRKHTLTEWERHAGCKAKKWKHSVKVESTMQPLIKWITEHNVPAGIPPQLDQQQILSFLQEKYEPVYAKWTTERCAICRWVEDWEYNKIIICNRCQMAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPEVLFQNHEAMEPATGILKIARNSFSKTCVICKQSHGSCISCCKCATHFHVTCASRMGYIMELHSTEKNGTTTTKTLIYCATHRVPNPDSGLVVHTPMEVFSPTISLQNHPRCFRGSSLASSKNVELLEPSKSEIHEIDPLSAARNRVYRRSSNKKNVEPTIHLLGGPKIHSLREITQMNGIKNAQPREFSSLKERLQHLRKTENHRVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISDEVMIDATDKGNIARIINHSCMPNCFARIMCLSGEENRIVLIAKTNVSAGEELTYNYLFDVDEPDELKVPCLCKAPNCREFMN* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00824 971 ProSitePatterns Zinc finger PHD-type signature. 541 586 IPR019786 -
Lapu6g00824 971 CDD SET_SETD1-like 818 967 - -
Lapu6g00824 971 Pfam PWWP domain 187 283 IPR000313 -
Lapu6g00824 971 SMART set_7 829 952 IPR001214 GO:0005515
Lapu6g00824 971 CDD PHD_ATX3_4_5_like 540 586 IPR042011 -
Lapu6g00824 971 Pfam PHD-finger 553 587 - -
Lapu6g00824 971 MobiDBLite consensus disorder prediction 1 24 - -
Lapu6g00824 971 FunFam Histone-lysine N-methyltransferase 804 971 - -
Lapu6g00824 971 Gene3D SET domain 797 971 IPR046341 -
Lapu6g00824 971 CDD PHD_TCF19_like 357 407 - -
Lapu6g00824 971 ProSiteProfiles Zinc finger PHD-type profile. 354 410 IPR019787 -
Lapu6g00824 971 MobiDBLite consensus disorder prediction 44 75 - -
Lapu6g00824 971 FunFam Histone-lysine N-methyltransferase 590 709 - -
Lapu6g00824 971 SUPERFAMILY FYVE/PHD zinc finger 354 415 IPR011011 -
Lapu6g00824 971 ProSiteProfiles Extended PHD (ePHD) domain profile. 592 707 IPR034732 -
Lapu6g00824 971 Pfam PHD-zinc-finger like domain 594 706 - -
Lapu6g00824 971 Gene3D - 177 285 - -
Lapu6g00824 971 ProSiteProfiles Post-SET domain profile. 955 971 IPR003616 -
Lapu6g00824 971 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 413 IPR013083 -
Lapu6g00824 971 SUPERFAMILY FYVE/PHD zinc finger 539 603 IPR011011 -
Lapu6g00824 971 SMART PostSET_3 955 971 IPR003616 -
Lapu6g00824 971 Pfam SET domain 840 945 IPR001214 GO:0005515
Lapu6g00824 971 SUPERFAMILY Tudor/PWWP/MBT 183 285 - -
Lapu6g00824 971 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 590 708 IPR013083 -
Lapu6g00824 971 Pfam PHD-finger 356 409 IPR019787 -
Lapu6g00824 971 MobiDBLite consensus disorder prediction 44 79 - -
Lapu6g00824 971 ProSiteProfiles PWWP domain profile. 186 255 IPR000313 -
Lapu6g00824 971 ProSiteProfiles Zinc finger PHD-type profile. 538 589 IPR019787 -
Lapu6g00824 971 SMART PHD_3 651 707 IPR001965 -
Lapu6g00824 971 SMART PHD_3 356 408 IPR001965 -
Lapu6g00824 971 SMART PHD_3 540 587 IPR001965 -
Lapu6g00824 971 SUPERFAMILY SET domain 825 967 IPR046341 -
Lapu6g00824 971 ProSiteProfiles SET domain profile. 829 946 IPR001214 GO:0005515
Lapu6g00824 971 PANTHER PHD FINGER PROTEINS 24 386 - -
Lapu6g00824 971 CDD PWWP_AtATX3-like 187 286 - -
Lapu6g00824 971 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 535 589 IPR013083 -
Lapu6g00824 971 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 7 971 IPR025780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00824 Lapu-Chr6 8478952 8488428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00824 541 706 C2H2 Transcription Factor Family AT3G14740 34.286 5.59e-22 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu6g00824 zf-HC5HC2H_2 2.7e-28 CL0390